Detail information of GWHGAAEX006823/evm.TU.scaffold_19.152


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|383766144|ref|YP_005445125.1|2.00E-94UDP-glucose 4-epimerase [Phycisphaera mikurensis NBRC 102666]
KOGKOG13710UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase
nrgi|743803354|ref|XP_010926896.1|0PREDICTED: probable UDP-arabinose 4-epimerase 2 isoform X1 [Elaeis guineensis]
Swissprottr|Q9SA77|ARAE1_ARATH0UDP-arabinose 4-epimerase 1
trEMBLtr|M0RVF0|M0RVF0_MUSAM0Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr11P25700_001}
TAIRAT1G306200NAD(P)-binding Rossmann-fold superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000002036605063684700-
Transcript Sequence

Network for GWHGAAEX006823

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF16363.4GDP_Man_Dehyd743891.80E-55
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K12448UXE, uxe Metabolic pathways map01100
Amino sugar and nucleotide sugar metabolismmap00520

Gene Ontology

GO term OntologyName
GO:0006012Biological Processgalactose metabolic process
GO:0003978Molecular FunctionUDP-glucose 4-epimerase activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms50.530
SRR2545915Juvenile tuber44.770
SRP108465SRR5643513five period of Gastrodia elata55.260
SRR5643514five period of Gastrodia elata58.950
SRR5643515five period of Gastrodia elata64.930
SRR5643524five period of Gastrodia elata69.680
SRR5643525five period of Gastrodia elata60.890
SRR5643528five period of Gastrodia elata104.920
SRR5643658five period of Gastrodia elata55.480
SRR5643659five period of Gastrodia elata44.150
SRR5643660five period of Gastrodia elata44.170
SRR5643661five period of Gastrodia elata50.840
SRR5643662five period of Gastrodia elata48.810
SRR5643663five period of Gastrodia elata43.060
SRR5643664five period of Gastrodia elata42.170
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_149.500
SRR6049655Rhizomagastrodiae_C368-T10_good_149.860
SRR6049656Rhizomagastrodiae_C368-T07_good_156.700
SRR6049657Rhizomagastrodiae_C368-T07_good_146.940
SRR6049658Rhizomagastrodiae_C368-T04_good_163.780
SRR6049659Rhizomagastrodiae_C368-T04_good_165.040
SRR6049660Rhizomagastrodiae_C368-T01_good_153.940
SRR6049661Rhizomagastrodiae_C368-T04_good_154.220
SRR6049662Rhizomagastrodiae_C368-T01_good_167.660
SRR6049663Rhizomagastrodiae_C368-T01_good_171.360
SRR6049664Rhizomagastrodiae_C368-T10_good_175.360
SRR6049665Rhizomagastrodiae_C368-T10_good_175.360
SRP279888GastroGastrodia elata tuber 49.13
JuvenJuvenile tuber37.51
Mother_GastroMother tuber of Gastrodia elata 90.96
Mother_JuvenMother tuber of Juvenile 88.37