Gene detail

Detail information of GWHGAAEX006824/evm.TU.scaffold_19.153

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|743803345\|ref\|XP_010926894.1\|	0	PREDICTED: protein PAT1 homolog 1 isoform X1 [Elaeis guineensis]
trEMBL	tr\|F6HTJ0\|F6HTJ0_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB58000.1}
TAIR	AT1G79090	5.00E-177	Unannotated protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000020	3722275	3747216	-

Transcript Sequence
>GWHTAAEX006824 CCTAGATTTCCTATTTCTATTTTTTCGGCTACGATCTTTGTCTACCCTAGTTCTGATCGTTTATATATTCCATCGTTTTGTAATAGAAAATTGACTATTTTGCTTTAGTTGTAATATCTTTTATGATACCTTTTGCGCTCCTTGTCTCCGTTTCTTTGTTTAGATCTGAAATTCTGTGAAAAGTTTGCGACTGGATTCGGTTCTATAGAAAATTTCCGTCCTTGAATATTTCATACATCTTGTACCCCGGAAATGATGTTTTGGTCTATTGATATTCTCCTGTATTGAAGGGTTCGGCTGCAAAGGAATTGTGATGGAAAGGTTAGGGGGTTTTAGCCTTGAGGGCGGGGTTTCTGATAATAATTCACGCGTTGGAGAGTTTGAAGGCATGGATGGCGGCGCTGGCGATGCTAGGTTTGATGCTTCTCAGTATGAGTTTTTTGGAAAGCATGCTATGGAGGAAGTAGAGCTTGGGGGTCTGGAAGATGGTAATGAAGATTCTGAATTTGGACTTAATGATGAGGATTTTTTGTTTCCAACTCATCATAATAGACAGGAGTTGAATAAAGCTGTTACACCACCAAGGAGCACAGCTGCTATTAGTGGGAGAGAATCACTTTCTAGAGAAAGCTCTGTTGCTGCAGATAAGGAAAGGGACTTAGACTTCTCCTGTTGTCCTGATCAGAATGTTTTAGATGCTGATAATGCCCAGGATGGTAAACGTTGGTGGTCACATCCATATCCTTCTTCTTCTCCTTCTCGCCTTGCAGACTCCAAACCTTTGTACAGAACGACATCATCCCCATACGAACAGCAGCAGCTAAATTCATTTGAGCAATATCCCCTTCCCAACTCGTCCTTCACTCCATACCCTTCCCTGTCCTTTGGATTACCTCAGGCTTCCCAAATTATGTCCCCCAGTATGGACATTTTAACACCAGATACTGGACTACAACCACATTTTTCTGCGAATAAATTCTTTTCTTTCTCGGATGCTCTTCCTCATCTTTCTGATACCTATCATGGGGTGAACTACAGGGGAAGCATGGCTCAATTTATTTCCCCAGCATCGTCCATCAGTAATCAGGAAGAGAACAGTTTGTTGAGGCAGGCTAGTGCTTTTCCTGGCTTTTTTCAGCAGAATCTATCTCATTTAAATGGTCTAATGGCATCACAGCAACCTAGATTTCACAATGTTCAGCCTTCTCCATCACATTTCTTTCCTCAATTATTCGGTTCCCATCCCTCGCCTCACATGGTCGAGGCAGTGCTCGGATTGGCTGAATCGAGGGATCAAGGATTGATGGCAGTGCAGAGGGCAAGGCAGAGCACGCGATTTCCTAATCAGTTCTTAGACACAGGGAACCAAAGGAGCAGCAGCCCATGGCCTCAATTCCGATCCAAGTACATGTCTTCTGAAGAGATTGAAGGCATTTTGAGAGTTCAGCATGTTGCAACTCACAGCAACGATCCCTACTCTGATGATTACTACCATCAAGCCTGCCTAGCAAAAAGAAGCGCCGGATCAAAGCTGAGGCACCACTTCAGTCCAAATTCTATCAGGGAGCTGTCTGCAAGACCCCGCTCTAACAGTGAGCCACACGCATATCTTCAGGTGGAAGCTCTCGGAAGGATCCCCTTCTCTTCGATCCATAGGCCTCGTCCTCTGCTCGATATGGAATCATCTTCTTCTGCAGCTTCAGGAAGTTGCTCCGAGCAGAAATGTCCCTCAAAGCCTCTAGAGCAGGAACCCATGCTGGCTGCTAGAATCACCATTGAGGACGATCTCTGCCTCCTCCTTGATATAGATGATATTGATAGGTTCCTGCAGTTCAATCCACTCCATGGCAGTGACTCTGAGCTAAAAAGGAGACGAGAGGCTCTTTTGGAAAGCCTCGCAGCATCCTTCATACTGGTTGATCCGCTTGACTCCAATAAATCCGCCGGTAAGCCCATAGAAATTGATCCCAATGACGATTTCGTCTTTCTTCGCATGATGTCTCTCTCAAAGGGTCGCAAGCTATTGTCGAGCTTTCTTCTGCGCCTCGCTCCTAGCAGCGAGCTAACTCGAATAATTTGCATGGCCATTTTTCGCCATCTCAGGTTTCTGTTTGGCGGTTTGCCCTCTGACGCAGCGGCAGCCGAAACCACATCTTCCCTTGCCAGAACTGTATCTCTGTGTGTGTCTGGGATGGATTTAAGCACTCTCAGCTCATGCCTTGCTGCAGTTGTTTGTTCATCCGAACAACCTCCCCTTCGTCCGATCGGAAGTGTGGCTGGTGACGGCGCCTCTCTGGTTCTAAGGTCAGTAGTCGAGAGGGCTACAGAGCTCTTGAAGGATAATCATCATGCTGCAAGCTCATATAGCATTCATAATCGAGCACTGTGGCAGGAATCGTTCAACGCATTCTTCGTGCTTCTTCTAAAATATTGCTCAAGCAAGTACGACACCATAACGCGGTCATTGCCCATGAACTCAAAGGATTCTTCTGTCGCAGCCGGATCGGAGGCGACCCAGGCAATCCACATGGAGATGCCGGTTGAGTTGCTGCGTGCCAGTCTTCCCCACACAGACGAGCGCCAGCGAAAGCTTCTGTTGGAGTTGGCTCAGCGATCCATGCCTGTCACGGGGTAAAGTTGGCTGGTCATTTTGTGTTGTTCATCTTTTTTGCGCTCCTTTTTTTGGCCGGATCTTTGACAAACCCTAGAATGCGGGCTGGGTTTGGAAGGAAGAAGGTCTGTTTCCTCAAAGGCGCTTAGTTTTTGTGCTCCTTGTTGGAACTCCGGGAAGGAATGGGGATAATGTACAGGTTCGGGCATTCAACTTTTTGTTATCTTCTTTATTATCCTTTTTTGTGTTTTATTTGTGGCAAAGTTCTGTATCATCCATGGCTGGATGATTTTAATGTTTTTAGCTAATATAACTTTCTGAAGAATCCCCACTCCACTTGTATTGAGAGTAGCGAAGGTGTAGTTTTCCTCTGGTTTGTCTTCAGTGTTGTGTCCATTTTTGTTGTTTCCAGACATATTTTATACTCATCTTGGTTCCTGAGATTGCCACTTTATATGGTATCGCAAAAGTTATGAAAGATGAACAAGGAGATAGTTTTTTATTAATATTTTCTCATTAATTTTCTTATACATTTTAAGTATGCTTAATATTAATATTTTTAGACAAGATTATGCTTGACTTTTTTTATTTTTGATGTTATGTTATGCCATATAATTGAGGAAGAAGTCTGCAGGAAAAGATCTTAAAAAAAGCTTATCAGTATTAAGAGAAGTTATTTGGAGAGCTTTGGAGAGAAGGAATTTTTACTTAATAAATATATGCTATTTGAGATATGTATAATGGAGTTGATTTTTCTATTACTATTGGATT

Network for GWHGAAEX006824

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12617	PATL1, PAT1	RNA degradation	map03018

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	20.470
SRP064423	SRR2545915	Juvenile tuber	20.470
SRP108465	SRR5643513	five period of Gastrodia elata	16.070
	SRR5643514	five period of Gastrodia elata	15.630
	SRR5643515	five period of Gastrodia elata	17.320
	SRR5643524	five period of Gastrodia elata	13.870
	SRR5643525	five period of Gastrodia elata	20.630
	SRR5643528	five period of Gastrodia elata	18.170
	SRR5643658	five period of Gastrodia elata	19.170
	SRR5643659	five period of Gastrodia elata	28.040
	SRR5643660	five period of Gastrodia elata	28.320
	SRR5643661	five period of Gastrodia elata	27.860
	SRR5643662	five period of Gastrodia elata	36.530
	SRR5643663	five period of Gastrodia elata	28.760
	SRR5643664	five period of Gastrodia elata	24.240
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	16.290
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	17.230
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	17.760
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	15.210
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	17.030
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	17.710
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	18.400
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	17.090
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	18.020
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	20.350
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	17.130
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	17.130
SRP279888	Gastro	Gastrodia elata tuber	23.90
	Juven	Juvenile tuber	16.45
	Mother_Gastro	Mother tuber of Gastrodia elata	20.24
	Mother_Juven	Mother tuber of Juvenile	20.71