Detail information of GWHGAAEX006825/evm.TU.scaffold_19.154
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 0 | FOG: PPR repeat |
| nr | gi|743803341|ref|XP_010926893.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At1g30610, chloroplastic [Elaeis guineensis] |
| Swissprot | tr|Q9SA76|PPR64_ARATH | 0 | Pentatricopeptide repeat-containing protein At1g30610, chloroplastic (Precursor) |
| trEMBL | tr|I1HQB3|I1HQB3_BRADI | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:BRADI2G46360.1} |
| TAIR | AT1G30610 | 0 | pentatricopeptide (PPR) repeat-containing protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000020 | 3852387 | 3936817 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX006825
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module8 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 472 | 498 | 0.007 |
| PF13041.5 | PPR_2 | 554 | 598 | 2.20E-09 |
| PF01535.19 | PPR | 628 | 656 | 0.57 |
| PF01535.19 | PPR | 696 | 722 | 0.037 |
| PF01535.19 | PPR | 730 | 757 | 3.90E-06 |
| PF01535.19 | PPR | 777 | 806 | 0.52 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 17.120 |
| SRR2545915 | Juvenile tuber | 23.750 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 5.640 |
| SRR5643514 | five period of Gastrodia elata | 5.440 | |
| SRR5643515 | five period of Gastrodia elata | 5.590 | |
| SRR5643524 | five period of Gastrodia elata | 5.970 | |
| SRR5643525 | five period of Gastrodia elata | 3.710 | |
| SRR5643528 | five period of Gastrodia elata | 3.680 | |
| SRR5643658 | five period of Gastrodia elata | 6.640 | |
| SRR5643659 | five period of Gastrodia elata | 7.780 | |
| SRR5643660 | five period of Gastrodia elata | 10.270 | |
| SRR5643661 | five period of Gastrodia elata | 7.670 | |
| SRR5643662 | five period of Gastrodia elata | 9.970 | |
| SRR5643663 | five period of Gastrodia elata | 11.560 | |
| SRR5643664 | five period of Gastrodia elata | 9.830 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 5.630 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 4.170 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 6.080 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 5.360 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 6.580 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 6.360 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 6.340 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 7.980 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 7.270 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 5.200 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 4.110 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 4.110 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 7.76 |
| Juven | Juvenile tuber | 7.15 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 3.07 | |
| Mother_Juven | Mother tuber of Juvenile | 6.60 |