Detail information of GWHGAAEX006826/evm.TU.scaffold_19.155
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|169828495|ref|YP_001698653.1| | 3.00E-36 | reticuline oxidase [Lysinibacillus sphaericus C3-41] |
| nr | gi|672174089|ref|XP_008807189.1| | 0 | PREDICTED: tetrahydrocannabinolic acid synthase-like [Phoenix dactylifera] |
| Swissprot | tr|A6P6W1|CASL2_CANSA | 5.00E-132 | Cannabidiolic acid synthase-like 2 (Precursor) |
| trEMBL | tr|W9R7Q6|W9R7Q6_9ROSA | 3.00E-161 | Reticuline oxidase-like protein {ECO:0000313|EMBL:EXB75197.1} |
| TAIR | AT5G44400 | 3.00E-148 | FAD-binding Berberine family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000020 | 3991966 | 3993985 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX006826
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01565.22 | FAD_binding_4 | 70 | 210 | 5.10E-21 |
| PF08031.11 | BBE | 472 | 530 | 3.80E-20 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055114 | Biological Process | oxidation-reduction process |
| GO:0050660 | Molecular Function | flavin adenine dinucleotide binding |
| GO:0071949 | Molecular Function | FAD binding |
| GO:0016491 | Molecular Function | oxidoreductase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 13.380 |
| SRR2545915 | Juvenile tuber | 25.960 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 86.700 |
| SRR5643514 | five period of Gastrodia elata | 35.600 | |
| SRR5643515 | five period of Gastrodia elata | 97.260 | |
| SRR5643524 | five period of Gastrodia elata | 50.310 | |
| SRR5643525 | five period of Gastrodia elata | 7.920 | |
| SRR5643528 | five period of Gastrodia elata | 3.540 | |
| SRR5643658 | five period of Gastrodia elata | 2.690 | |
| SRR5643659 | five period of Gastrodia elata | 41.980 | |
| SRR5643660 | five period of Gastrodia elata | 22.790 | |
| SRR5643661 | five period of Gastrodia elata | 49.210 | |
| SRR5643662 | five period of Gastrodia elata | 47.800 | |
| SRR5643663 | five period of Gastrodia elata | 71.130 | |
| SRR5643664 | five period of Gastrodia elata | 32.010 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 40.650 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 68.090 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 67.260 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 38.500 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 37.730 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 32.550 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 37.860 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 47.260 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 70.260 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 65.750 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 84.080 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 84.080 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 49.65 |
| Juven | Juvenile tuber | 5.17 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 11.37 | |
| Mother_Juven | Mother tuber of Juvenile | 7.28 |