Detail information of GWHGAAEX006827/evm.TU.scaffold_19.156


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|743855835|ref|XP_010941632.1|8.57E-61PREDICTED: ribonuclease H2 subunit C isoform X2 [Elaeis guineensis]
trEMBLtr|M0RVE8|M0RVE8_MUSAM4.00E-57Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr11P25680_001}
TAIRAT2G39440_22.00E-32Unannotated protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000002040020064008235+
Transcript Sequence

Network for GWHGAAEX006827

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module3

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF08615.10RNase_H2_suC321515.50E-24
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K10745RNASEH2C DNA replication map03030

Gene Ontology

GO term OntologyName
GO:0006401Biological ProcessRNA catabolic process
GO:0032299Cellular Componentribonuclease H2 complex

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms23.460
SRR2545915Juvenile tuber23.160
SRP108465SRR5643513five period of Gastrodia elata25.460
SRR5643514five period of Gastrodia elata20.770
SRR5643515five period of Gastrodia elata20.250
SRR5643524five period of Gastrodia elata19.490
SRR5643525five period of Gastrodia elata14.760
SRR5643528five period of Gastrodia elata12.000
SRR5643658five period of Gastrodia elata13.450
SRR5643659five period of Gastrodia elata38.590
SRR5643660five period of Gastrodia elata44.000
SRR5643661five period of Gastrodia elata44.220
SRR5643662five period of Gastrodia elata35.080
SRR5643663five period of Gastrodia elata36.310
SRR5643664five period of Gastrodia elata41.790
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_113.140
SRR6049655Rhizomagastrodiae_C368-T10_good_123.410
SRR6049656Rhizomagastrodiae_C368-T07_good_112.180
SRR6049657Rhizomagastrodiae_C368-T07_good_113.650
SRR6049658Rhizomagastrodiae_C368-T04_good_12.090
SRR6049659Rhizomagastrodiae_C368-T04_good_11.500
SRR6049660Rhizomagastrodiae_C368-T01_good_16.660
SRR6049661Rhizomagastrodiae_C368-T04_good_12.490
SRR6049662Rhizomagastrodiae_C368-T01_good_17.670
SRR6049663Rhizomagastrodiae_C368-T01_good_14.540
SRR6049664Rhizomagastrodiae_C368-T10_good_117.870
SRR6049665Rhizomagastrodiae_C368-T10_good_117.870
SRP279888GastroGastrodia elata tuber 38.67
JuvenJuvenile tuber22.60
Mother_GastroMother tuber of Gastrodia elata 16.45
Mother_JuvenMother tuber of Juvenile 16.47