Detail information of GWHGAAEX006830/evm.TU.scaffold_19.159


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|499080233|ref|YP_007977842.1|1.00E-24LSU ribosomal protein L6p (L9e) [Thermotoga maritima MSB8]
KOGKOG32542.00E-50Mitochondrial/chloroplast ribosomal protein L6
nrgi|449451529|ref|XP_004143514.1|4.73E-56PREDICTED: 60S ribosomal protein L6, mitochondrial-like [Cucumis sativus]
Swissprottr|P26861|RM06_MARPO2.00E-4460S ribosomal protein L6, mitochondrial
trEMBLtr|W5GIF8|W5GIF8_WHEAT8.00E-57Uncharacterized protein {ECO:0000313|EnsemblPlants:Traes_6BL_246FD04F2.1}
TAIRAT2G184002.00E-50ribosomal protein L6 family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000002040186764033806-
Transcript Sequence

Network for GWHGAAEX006830

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00347.22Ribosomal_L622982.30E-14
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02933RP-L6, MRPL6, rplF Ribosome map03010

Gene Ontology

GO term OntologyName
GO:0006412Biological Processtranslation
GO:0019843Molecular FunctionrRNA binding
GO:0003735Molecular Functionstructural constituent of ribosome
GO:0005840Cellular Componentribosome

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms18.100
SRR2545915Juvenile tuber19.870
SRP108465SRR5643513five period of Gastrodia elata19.940
SRR5643514five period of Gastrodia elata20.090
SRR5643515five period of Gastrodia elata18.920
SRR5643524five period of Gastrodia elata21.110
SRR5643525five period of Gastrodia elata8.490
SRR5643528five period of Gastrodia elata13.030
SRR5643658five period of Gastrodia elata13.760
SRR5643659five period of Gastrodia elata20.770
SRR5643660five period of Gastrodia elata21.270
SRR5643661five period of Gastrodia elata21.790
SRR5643662five period of Gastrodia elata18.230
SRR5643663five period of Gastrodia elata17.810
SRR5643664five period of Gastrodia elata17.880
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_111.770
SRR6049655Rhizomagastrodiae_C368-T10_good_125.030
SRR6049656Rhizomagastrodiae_C368-T07_good_111.440
SRR6049657Rhizomagastrodiae_C368-T07_good_112.210
SRR6049658Rhizomagastrodiae_C368-T04_good_19.990
SRR6049659Rhizomagastrodiae_C368-T04_good_19.950
SRR6049660Rhizomagastrodiae_C368-T01_good_110.490
SRR6049661Rhizomagastrodiae_C368-T04_good_110.890
SRR6049662Rhizomagastrodiae_C368-T01_good_111.510
SRR6049663Rhizomagastrodiae_C368-T01_good_113.910
SRR6049664Rhizomagastrodiae_C368-T10_good_114.330
SRR6049665Rhizomagastrodiae_C368-T10_good_114.330
SRP279888GastroGastrodia elata tuber 15.27
JuvenJuvenile tuber11.07
Mother_GastroMother tuber of Gastrodia elata 10.85
Mother_JuvenMother tuber of Juvenile 10.52