Gene detail

Detail information of GWHGAAEX006831/evm.TU.scaffold_19.162

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG4521	Nuclear pore complex, Nup160 component
nr	gi\|743812389\|ref\|XP_010929399.1\|	PREDICTED: nuclear pore complex protein NUP160 [Elaeis guineensis]
Swissprot	tr\|Q9C811\|NU160_ARATH	Nuclear pore complex protein NUP160 {ECO:0000303\|PubMed:21189294}
trEMBL	tr\|K3YP94\|K3YP94_SETIT	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Si016086m}
TAIR	AT1G33410	SUPPRESSOR OF AUXIN RESISTANCE1

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000020	4042356	4047511	-

Transcript Sequence
>GWHTAAEX006831 CGGAGCATTCCGCTAAACCCTAAACAGCAAAACAAAGGCGGCCCCTTTCACCCGACTCCTTAGCACCATGGAAGTTCCCATTGCCTTTGGAGACGGGATCAAGTGGATTCAGCTCACCGTCCCTTCCTCCCATCCGCTTTCTTCCGACTCAGTAATCACTCCTCCGTTGATTCGCCAAAACGCTGCCTCCTGCAGCGTGGTTTCCGGCGATCCACCTTCTTACTTGTTCTGGAGAATACATGAAAACCTTCCTAACACATTGGAGGTTGTTGAACTCTTTGGTTGCAAGGAATACGCTGAAACTGGGTTGCATCTTGTCTTTCCGGACGCCCTCCATCCTTTTGCATTTCTGTATAAAAACGACTGTGCAACAGAAGATGGGTACTTGCTTTACGCATTGACGGTTTCAGGAATAGCTTATCTTATCAAATTGAAAAGGCCTTTCAATCTTTTCTCCGGTTCAGTTTTCCCCCAGAGTGAGATTGTAGAATTCAGTGTGCAATGCTCTACCTTGGATGGTAAGGTTACGGCTGTAGCCGGAACGTTGGGATGCCTCTTGATTGGGCGTCATGATGGTTCAGTTGGCTGTTACCAACTCGGAGTTCTGGATCCCTCCAAGCCAGGATTCTTGCATGAACTACGAGATGATGCTGGGCTAAGCCGTTTATGGAATATCATGTCCAGGGGAAAGGCTGCAGGGGCTGTGCAGGATATGGCTGTGGCTGAGGTTTGCACAAGAAAATTGCTATTCGTTCTTCATTCTGATGGGACCATTCGCGTATGGGATCTTGCAAGCCACCTAAGGGTGCTGGCTCACAGCCTGATCTCAAATGAACTAACAGGTACTATTCCCTTTCGGCTATGGATTGGTTCTACTAACTATGACGCTAGTGTGATTACTTTAGCGGTTTTGCATCTATCTGATATTGAGATGGTCGCCGTTTATAGCTTTGTTGTTAATGTTGGAGAGAAGAACATCATATCACCGGCGCCTTTGTTGAAAACTATCCTTTTGGACAAGGGGCGATTTATAGACTTGAAAATCAGTTCTGACAAGATTTGGATTTTAAAAAAAGATGAATCACTGTTTTACGAGCTGTCTGATTATGATTATAAAATGGAACATTCGTTCAATTATGGTTTGCAAGAAGAGTTTGTGGCCGAACAACTTTTTCAAACCTCGGAACATGCTTTAGATGATCTAGTTTGGGCTAACACTTCCATTTTTCATTCTATGAAGGACCAAGTCGTCCATTTTGTATCCTCGATATTTTTACAAATCTTACTCCAACCTGATGTTTATAATAGTACTGCTTTTCGCGCCATACTTGCTGATCGGAATAAGTACATTTCTGATTATGAGTTTCAGTCTCTTTCTGTTGCTGGCATAAGAAGAGAAATCTTCTCAACTGTCAATGATGAGTTATGTTCTATGAATTCAAGCTCAGTGGTCAGCTGCTGGAAGGATTTTTGCACTCATTATTTTCGGTATTGGTGTCAGTTTAATGTGCCTTATGGATTGTTCTTTGATTCTTCAAGCAATGCACTTGGATTAATCAGGAAAAATTCTTTTTCACTTTTCCGTTCATTAGAAGGAGTTGAGAAGCTTATATATGGTTCTTCTGATGAATTTCAAGATATTGGGCTGGTTTTACCAACAGGCGTTGATAGTGAACTGTTTTATGAAGTGTTGCGATGCACTAGCCACATAAATCATCAGTTAGGAAGAACCGCCTCTGCGGTTTTTTATGAATCTATTTTTTCTTCTTTAATTCCATCAGAAGATATCATCATTCACTTACTCAAGATCCTGGAAACTGGATTCTGTCCTTCTGCTAGTTCTTTGCTAGTGCAGAGTGGAGTTGATGTTGAAAAGAAGCAATCTGCTCATAGAAGCTTGCGAAACTTCTCCGTGGACATGCTGCTCTCTCTTCATGCTTTGCATTCTAGGGCTGCAAACTGGGATGGGGTATTAAATGTTGTCGAAAAATACATTGAGTACCTAAAGCCACATAAAATTAGCCAACAGTCTAAGTTTGAAGGAAATTGCAGTGTCAATTTTTCTTTGTTGATTCAAGCTACTTCACAAGTTGCGAGGGTGATGTTTGAGACAGCTTTTGACGTACTTCTGCTTCTTGGATATCTAATCAATGTTAGTGGGCAGGTCTCAATGATGCATGCTGATGTTACCCGAATAAGAGCATATTTGATTCCTATGACTTATGAAACACTGATGCAATGGCTGGTTCTCCATTATATTGTAACAACTCCTACCAGTCCTTCAGTCATGGATGATTTCAGTTTCCGCCTCTCTTCATTGCACATAGGCAACAAAGCCAACAAAAAACCATGGGATAGAAATCTCGGGTTGTTCGGCTTTACATTAGGCTTTTTACTTGATTTCCCAAACTTCACCGAAGGTGATAATAACTATATTAAATCCTTTTTGAGCCCTGACAAGCTTATCCAGTATGTTTGGAAGTTTAGCAGTTTTGTGGTGTGGGGTGGTGCTTGTGGAGAATTGTCAATTGCATATAATCCAATATGTATGTTAGCATCCCTTATGCTTAGACAAGGACAGTATGGAGCAGCTGAGAATTTATTATATATAATAAACGACAATTCTGCTAAGAGCAATAATATATCCCTGAGTTTTTGGCAAGATGATACTGATTTGTGCAGACGGCTTCATCTTCTGGGGTTCTGCCTAATCATACGGGCACATTCTGAAGTAGATGGAGTCCTAAAGAGGCATAAAATTCGTGAAGCTGTTCGCTGTTTTTTCAGAGCTGCATCTTTCTCTGAAGCTTCACAGTCTTTGCAAAATCTTTCTTTGGAAACTGGCTTTGTATATTCTGGTGAATCTGGATCTACAGCTTTGTGGAAATTTCATTATTATCAATGGGCAATGCTAATCTTCGATGAATATGCTTTTAGTAAAGGTGCTTGTCAATTTGCACTTGCTGCTCTAGAACAAGCAGATGAAATTCTTGCACTGAAAGATAATCTGCACAATGAGCTTCTTTCCGAACCTACCTCGGAAATCTGCGGCACTTTGTGGGCAAATGTCTTTAAGTTTGCTTTGGATTTTAAGAGTTATAAGGATGCATACTGCGCCATGGTTTCAAACCCAGATGAGGATATCAAATACGTTTGTCTTAGGCGATTCATAGTCTTTCTCTGTGAGCGTGGTGCCACTAAGGTTCTCTGCGATGGCAATTTACCTTTTGTTGGAATGACTAATAAGGTGGAGCAAGAGTTATTTTGGAAGGCTGAACGTTCAGATATCTTTTCAAGGCCAAATCTATATAAGTTGCTCTATTCATTTCACGCATATCGTAACAACTGGAGAAAGGCTGCTAGCTATATTTATCGACATTCAATAAGATTAAGAAATGAAGTAACTGCAGATGATGCAGGAAAATTTTCTGAAGCTCTGCAAGAGAGGTTAGAGGGACTGTCTGCTGCGATCAACGCGCTTCAGCTCATTGACGGTGCATCTGCATGGATTGACACTAAATATGAGGATAGCTTTTTGATCGATCAAGGCTTACCGCACAAACGACCTCGGAATAGTTCAGCAGAAAAATCTGCTGTTTTTGATAATATTCCATCTGAGCAGCTGCAATATAATGTTGATATCCAAATGCTTGAAAAGGAGTATGTTTTAACATCTGCTGAGCTTTTGTTGTCTCAGCAAAAGAATACGATCAAGTTTTCAGGGAATAAAAAACTTTCACACTTAGTGGATTTCCTGATCGAAGAAAGTTTTTATGACACGGCTTTTACAGTTATTCTCGCCTTTTGGAAGGATTCTACATTGAACAGTAAGCTTGAGCTAGCTTTTATTGCTCTATCTGAGAAGTGTTTCTCAGGAGGAATAGTTTTTTCACCTCTAGAGAGCTCTGGGAAAGTAAATAACTTCTTGCTGTTGTCGCCAGAGGATGCAACGCATACAGAAGGGAGGATTTGCTCAATTTCTACGACCAAACAAATTGATGGAAATGGTCCCTGGAAAACACTTGAACTCTATCTTGAAAAATATAGAAAGATACACCAGAGATTGCCTGTAGTTGTGGCTGAGACACTTCTGCAAGGTGGTTCTCAGGTTGAGCTGCCTTTCTGGCTAGTAAACATGTTCAAAGCTGCACGAAGTGCAAATTGTTGGGGTATGACAGGTCAGCAGCCAGATCCTGCAGCGCTATTCCGGCTGTACATTGATTATGGCCGGCTTGCTGAAGCAACAAATCTGCTGCTTGAATACCTTGAAGCCTTTGCATCACAGAGTGCTGCCAATGCGATAAGCCGGAAGAAGATGTCAGCCATTTGGTTTCCTTACGTTGCTATTGAGCGCCTCTGGTGTCAGCTTGAGCAGTCATGCAGTGCAGGTCATATGGCTGAGCAGTGCGCTAATCTTAAGATGCTTTTGCAAGGAGCTTTGTTAAACCATCTACAGCAGGTCAAGGTGGATTCAGAGGATGCTGTGGCTTCTGCGAATGTGCTATGATTGATTTCAAGCTTAGACTAGAATGAGATTTCTATGACTCAACATTACTCCAATATCCATCACCTCTGATGATTGTTTATTGATCAAAATGGAGTGATATTGGTGTTGTGATTTAGAGATGCGATGTTTCGTATGTATATATCAAAAATCGCAGTGAATAGGAAGCAGTTCAGGGGGCAAGCTTATGAGAAATAGATCAATTAACTTATGCACACATCCAGAGACATCATTAATTGATTTGAATAATGACTTTGATATGGTATTCCGCCCAGTATCCCATCCACAACTCAACCCGATTAATACATCTAAATTTAGTGTTAAATTGATAAAAATAAAGATTTATTAAGTTAAAATAATAATTATAATTGTATTAAAGGTATTTAATTGCCTGGAAAAAAGTTGGGACTATGGAGAAGGTGCCAAAATATTTTTCTTTTAAAAGACAGTCACTTTATGTGATGTGGCTTGTTTTTCTTGTAATATGCATATAGTTGTGGGATTGTAGAATCTGCATATTCATATTTCAGCGTTCTGTCTCAATCCCTTGAGACACTTGGCAATTTTGGAGAACA

Network for GWHGAAEX006831

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF11715.7	Nup160	53	513	3.40E-26
PF17238.1	DUF5311	532	712	9.20E-71

Protein Sequence

>GWHPAAEX006831
MEVPIAFGDGIKWIQLTVPSSHPLSSDSVITPPLIRQNAASCSVVSGDPPSYLFWRIHENLPNTLEVVELFGCKEYAETGLHLVFPDALHPFAFLYKNDCATEDGYLLYALTVSGIAYLIKLKRPFNLFSGSVFPQSEIVEFSVQCSTLDGKVTAVAGTLGCLLIGRHDGSVGCYQLGVLDPSKPGFLHELRDDAGLSRLWNIMSRGKAAGAVQDMAVAEVCTRKLLFVLHSDGTIRVWDLASHLRVLAHSLISNELTGTIPFRLWIGSTNYDASVITLAVLHLSDIEMVAVYSFVVNVGEKNIISPAPLLKTILLDKGRFIDLKISSDKIWILKKDESLFYELSDYDYKMEHSFNYGLQEEFVAEQLFQTSEHALDDLVWANTSIFHSMKDQVVHFVSSIFLQILLQPDVYNSTAFRAILADRNKYISDYEFQSLSVAGIRREIFSTVNDELCSMNSSSVVSCWKDFCTHYFRYWCQFNVPYGLFFDSSSNALGLIRKNSFSLFRSLEGVEKLIYGSSDEFQDIGLVLPTGVDSELFYEVLRCTSHINHQLGRTASAVFYESIFSSLIPSEDIIIHLLKILETGFCPSASSLLVQSGVDVEKKQSAHRSLRNFSVDMLLSLHALHSRAANWDGVLNVVEKYIEYLKPHKISQQSKFEGNCSVNFSLLIQATSQVARVMFETAFDVLLLLGYLINVSGQVSMMHADVTRIRAYLIPMTYETLMQWLVLHYIVTTPTSPSVMDDFSFRLSSLHIGNKANKKPWDRNLGLFGFTLGFLLDFPNFTEGDNNYIKSFLSPDKLIQYVWKFSSFVVWGGACGELSIAYNPICMLASLMLRQGQYGAAENLLYIINDNSAKSNNISLSFWQDDTDLCRRLHLLGFCLIIRAHSEVDGVLKRHKIREAVRCFFRAASFSEASQSLQNLSLETGFVYSGESGSTALWKFHYYQWAMLIFDEYAFSKGACQFALAALEQADEILALKDNLHNELLSEPTSEICGTLWANVFKFALDFKSYKDAYCAMVSNPDEDIKYVCLRRFIVFLCERGATKVLCDGNLPFVGMTNKVEQELFWKAERSDIFSRPNLYKLLYSFHAYRNNWRKAASYIYRHSIRLRNEVTADDAGKFSEALQERLEGLSAAINALQLIDGASAWIDTKYEDSFLIDQGLPHKRPRNSSAEKSAVFDNIPSEQLQYNVDIQMLEKEYVLTSAELLLSQQKNTIKFSGNKKLSHLVDFLIEESFYDTAFTVILAFWKDSTLNSKLELAFIALSEKCFSGGIVFSPLESSGKVNNFLLLSPEDATHTEGRICSISTTKQIDGNGPWKTLELYLEKYRKIHQRLPVVVAETLLQGGSQVELPFWLVNMFKAARSANCWGMTGQQPDPAALFRLYIDYGRLAEATNLLLEYLEAFASQSAANAISRKKMSAIWFPYVAIERLWCQLEQSCSAGHMAEQCANLKMLLQGALLNHLQQVKVDSEDAVASANVL

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14303	NUP160, NUP120	RNA transport	map03013

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	5.320
SRP064423	SRR2545915	Juvenile tuber	5.920
SRP108465	SRR5643513	five period of Gastrodia elata	3.230
	SRR5643514	five period of Gastrodia elata	3.920
	SRR5643515	five period of Gastrodia elata	3.160
	SRR5643524	five period of Gastrodia elata	3.500
	SRR5643525	five period of Gastrodia elata	1.540
	SRR5643528	five period of Gastrodia elata	1.600
	SRR5643658	five period of Gastrodia elata	1.700
	SRR5643659	five period of Gastrodia elata	6.210
	SRR5643660	five period of Gastrodia elata	6.600
	SRR5643661	five period of Gastrodia elata	5.240
	SRR5643662	five period of Gastrodia elata	5.550
	SRR5643663	five period of Gastrodia elata	4.950
	SRR5643664	five period of Gastrodia elata	3.840
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	4.230
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	3.770
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	4.530
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	3.170
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	3.580
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	3.440
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	4.570
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	4.250
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	5.350
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	5.290
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	4.180
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	4.180
SRP279888	Gastro	Gastrodia elata tuber	4.80
	Juven	Juvenile tuber	4.14
	Mother_Gastro	Mother tuber of Gastrodia elata	2.13
	Mother_Juven	Mother tuber of Juvenile	1.48