Gene detail

Detail information of GWHGAAEX006836/evm.TU.scaffold_19.167

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|91772641\|ref\|YP_565333.1\|	0	copper-translocating P-type ATPase [Methanococcoides burtonii DSM 6242]
KOG	KOG0207	0	Cation transport ATPase
nr	gi\|672178904\|ref\|XP_008809602.1\|	0	PREDICTED: copper-transporting ATPase RAN1-like isoform X1 [Phoenix dactylifera]
Swissprot	tr\|Q9S7J8\|HMA7_ARATH	0	Copper-transporting ATPase RAN1
trEMBL	tr\|M0TNA0\|M0TNA0_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr8P06970_001}
trEMBL	tr\|M0TNA0\|M0TNA0_MUSAM	3.00E-18	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr8P06970_001}
TAIR	AT5G44790	0	copper-exporting ATPase / responsive-to-antagonist 1 / copper-transporting ATPase (RAN1)

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000020	4176219	4187313	-

Transcript Sequence
>GWHTAAEX006836 GTAGTTCCTCTGCATTTTGGCGTGCGCACTCCTCCTCTGGACCTCTCAGCCTAAGGTCCGCCCAGGATGGCTCCAAGCCTAAGAGACCTACAGTTGACCTCCCTATCTTTTGCCGCCGCCGACCGTGGCTCGCCGGAGATATCGGTAAGAGAGGATTTTGGCGATCTGGAAGACGTGAGGCTCCTGGACTCTTACGAAAACCGGGGAGCATCGTCTGCGGCAAGGGAAGAAGATGGCAGAGAGATGAGGAGGATTCAGGTGCGGATCTCCGGGATGACGTGCTCTGCGTGCACCAGCGCCGTTGAATCAGCGGTCGGCGAAGTTCCGGGAGTTGTTCTGGCCTCGGTTTCCCTTCTCCAGAACAAGGCTCACGTGGTGTTTGATCCCGATCTTGTGAAGGATGAAGACATAAAAAATGCTATCGAGGATGCAGGATTTGAAGCAGAAATTCTTGAGGATTCTAATGCTACTCAATTAAGATCACAAAAGACTTTAACTGGACATTTTAGAATAGGGGGCATGACTTGTGCGGCATGTGTGAACTCTGTTGAAGGCATTTTAAGGAAAATTCCTGGTATAAAAAGGGCAGTTGTTGCTCTAGCAACATCTTCAGGGGAAGTCGAGTATGATCCATCAGTAATCAGTAAAGATGAGATTATTAGTGCTGTGGAAGATAGTGGCTTCGAAGCTTCTTTTCTGCAAAGCAATGAGCAGGATAAATTTTGCTTTCGCATAGATGGGTTACATTGTGAAACCGATGTGCATCTTTTGCAAGGAATACTCAGAAATGCCAAAGGGGTGAAGCAGTTTGAGATAAGCAATAATATGCTAGAAATGGAAGTCATTTTTGACCCCGAAGCTATTGGTTTGAGATCTATAGTTGATGCTGTTGAAAATGGAAGTGGGGGGAAACTTAAAGTTACTGTCCGAAATCCATACAGCCTTGCATCTTCCAGTGATGCAAAAGAGATATCAAAAATGTTGAGGCTTTTTGTCTCCAGCTTCATTATTAGTCTTCCCATCTTTTTCATCAGAGCAATTTGCCCTCACATACCTTTTCTCAATTCCTTTCTACTCATGCATTGTGGGCCTTTTGTGATTGAAGACCTACTGAAGTGGGCACTAGCTACAATAATCCAGTTTGTTATTGGCAAGAGGTTCTATATTGCTGCTTATAGAGCATTGAGACATGGTTCAACGAATATGGATGTTTTAGTTGTGCTGGGAACTTCGGCTTCATACTTCTATTCGGTTTGGGCAGTGTTATATGGTATTTCCACAGGTTTCTCATCACCGACATATTTTGAAACTAGTGCAATGATAATTACTTTTGTCTTATTTGGGAAGTACTTAGAAGTGCTTGCAAAGGGAAAAACATCTGATGCTATTAAGAAGCTTGTGGAACTTGCTCCTTCGACTGCTATCTTATTGGAAAGAGATGCAGGAGAAAGACAAGGCACAGAAAGAGAAATTGATGCTCTGCTTGTGCAGCCAGGTGATGTTTTGAAGGTTCTTCCTGGTTCAAAAGTTCCTTGTGATGGTGTTGTTATGTGGGGCACAAGTTATGTTGATGAAAGTATGGTCACTGGTGAATCAAAACCTATAGCAAAGGAAGTTTCATCTCTAGTTATTGGGGGTACGATGAATTTACATGGAGCCCTACACATAAAGGCTACTAGGGTGGGATCTAGTACTGTTTTGAGCCAGATTATTTCTCTGGTCGAGGCTGCTCAAATGTCTAAAGCTCCTATCCAGCAATTCGCTGATTTTGTTGCCAGCATATTTGTGCCCATTGTTGTTGCCTTGTCATGCATAACATTTTTCGGATGGTTCATTTGCGGTTCATTTGGAGCATATCCAGAGACATGGCTTTCGAACAGCAGCAATTGCTTTGATTTTTCTCTCATGTTCTCTATAGCAGTCGTTGTGATTGCATGCCCTTGTGCACTGGGCCTTGCAACGCCCACTGCTGTCATGGTGGCAACTGGCGTTGGTGCTTCTAATGGAGTTTTGATAAAAGGAGGAGATGCTTTAGAGAGAGCTCAGAATATTCTCTATGTGTTATTTGATAAAACCGGAACACTAACACAAGGAAAAGCTACTGTCACAACGGCTAAAACTTTCTCAGGAATGGATCTCGGAGATTTCCTTACTTTAGTTGCGTCTGCAGAGGCTAGCAGCGAACATCCTCTTGCAAGGGCGATTATAGACTATGCTTGCCATTATCATTTCTTCGGTAAGGTTTCGAATACCAAAGATTCTCAAAAAATGAGAAAAGATGACCTTTTCACCGAATGGCTTCTCGAAACCTCTGAGTTCTCTGCTTTACCTGGAAGAGGGGTTCAATGCCTGGTTGGTGGAACGAAGATTCTGGTTGGGAACAGGAATCTATTGACCGAAAATGGACTCTCTGTTCCCTCTGAAGCTGAAAGTTTTTTGGTAGAATTAGAATCAAATGGTCAAACTGGTATTCTCGTGGCTTATGGTGGAGCCTTCACTGGTCTCTTGGCGATTGCTGATCCGTTGAAAAGAGAGGCATCAGTTGTTATTGAAGGTCTCAAGAAAATGGGCCTAAAGCCTGTTATGGTAACCGGCGACAATTGGAGGACAGCTCATGCTGTTGCAAGAGAGGTCGGGATTGAGGATGTTCGGGCGGAGGTGATGCCGGGGGGGAAGGCGGATGTGGTGCGGTCGTTCCAGAAGGATGGAGGGGTGGTTGCGATGGTGGGGGACGGGATCAACGACTCGCCGGCGCTGGCTGCAGCGGACGTGGGGATGGCGATCGGGGCGGGGACGGACATCGCGATCGAGGCGGCAGACTACGTGCTGATGAGGAGCAGGCTGGAGGACGTGATCACGGCCATCGATCTGTCCAGGAGGACCTTCGCCCGCATCCGCTGGAACTACTTCTTCGCCATGGCCTACAATCTGATCGCCATCCCGGTGGCCGCTGGCGTTCTGTTCCCCGTCACGAGGCGCACGATGCCACCCTGGCTCGCCGCTGCCTGCATGGCCTTCTCCTCTGTCAGCGTCGTCTGCTCCTCACTCCTCCTCAGATTCTACAGGAAGCCCAGCCTTACCTCTTTGCTCCAAATAACTGTTGACTGCTAATCACCCCATTTTTCTTCTCATCTCTCAGTATGTGTATATTTCTTTTACTTGAGCATTCAAATGTGCTTTCTAATTTTTAATAAAAAAGTAAAGCCTTTGCCTTTTCTTATTTGTTATTATTGTTGCAACTGAATCGAAGTATTGTGAGGTATAATCCTTTTTTTTCTGTTAAGGTGATGTGCCTATATTTATCTCTAACTTCTAAGTTAATTTTAGTTGTTTCATTAGTATCAAAACATTTTTGTCA

Network for GWHGAAEX006836

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00403.25	HMA	65	125	1.10E-13
PF00403.25	HMA	147	207	2.10E-13
PF00122.19	E1-E2_ATPase	462	644	1.20E-49
PF00702.25	Hydrolase	665	901	2.60E-40

Protein Sequence

>GWHPAAEX006836
MAPSLRDLQLTSLSFAAADRGSPEISVREDFGDLEDVRLLDSYENRGASSAAREEDGREMRRIQVRISGMTCSACTSAVESAVGEVPGVVLASVSLLQNKAHVVFDPDLVKDEDIKNAIEDAGFEAEILEDSNATQLRSQKTLTGHFRIGGMTCAACVNSVEGILRKIPGIKRAVVALATSSGEVEYDPSVISKDEIISAVEDSGFEASFLQSNEQDKFCFRIDGLHCETDVHLLQGILRNAKGVKQFEISNNMLEMEVIFDPEAIGLRSIVDAVENGSGGKLKVTVRNPYSLASSSDAKEISKMLRLFVSSFIISLPIFFIRAICPHIPFLNSFLLMHCGPFVIEDLLKWALATIIQFVIGKRFYIAAYRALRHGSTNMDVLVVLGTSASYFYSVWAVLYGISTGFSSPTYFETSAMIITFVLFGKYLEVLAKGKTSDAIKKLVELAPSTAILLERDAGERQGTEREIDALLVQPGDVLKVLPGSKVPCDGVVMWGTSYVDESMVTGESKPIAKEVSSLVIGGTMNLHGALHIKATRVGSSTVLSQIISLVEAAQMSKAPIQQFADFVASIFVPIVVALSCITFFGWFICGSFGAYPETWLSNSSNCFDFSLMFSIAVVVIACPCALGLATPTAVMVATGVGASNGVLIKGGDALERAQNILYVLFDKTGTLTQGKATVTTAKTFSGMDLGDFLTLVASAEASSEHPLARAIIDYACHYHFFGKVSNTKDSQKMRKDDLFTEWLLETSEFSALPGRGVQCLVGGTKILVGNRNLLTENGLSVPSEAESFLVELESNGQTGILVAYGGAFTGLLAIADPLKREASVVIEGLKKMGLKPVMVTGDNWRTAHAVAREVGIEDVRAEVMPGGKADVVRSFQKDGGVVAMVGDGINDSPALAAADVGMAIGAGTDIAIEAADYVLMRSRLEDVITAIDLSRRTFARIRWNYFFAMAYNLIAIPVAAGVLFPVTRRTMPPWLAAACMAFSSVSVVCSSLLLRFYRKPSLTSLLQITVDC

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K17686	copA, ctpA, ATP7	MAPK signaling pathway - plant	map04016

Gene Ontology

GO term	Ontology	Name
GO:0006812	Biological Process	cation transport
GO:0030001	Biological Process	metal ion transport
GO:0005507	Molecular Function	copper ion binding
GO:0046872	Molecular Function	metal ion binding
GO:0000166	Molecular Function	nucleotide binding
GO:0019829	Molecular Function	cation-transporting ATPase activity
GO:0016021	Cellular Component	integral component of membrane

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	48.420
SRP064423	SRR2545915	Juvenile tuber	53.310
SRP108465	SRR5643513	five period of Gastrodia elata	51.690
	SRR5643514	five period of Gastrodia elata	44.450
	SRR5643515	five period of Gastrodia elata	65.230
	SRR5643524	five period of Gastrodia elata	57.410
	SRR5643525	five period of Gastrodia elata	63.080
	SRR5643528	five period of Gastrodia elata	109.450
	SRR5643658	five period of Gastrodia elata	65.840
	SRR5643659	five period of Gastrodia elata	57.150
	SRR5643660	five period of Gastrodia elata	46.630
	SRR5643661	five period of Gastrodia elata	57.910
	SRR5643662	five period of Gastrodia elata	46.300
	SRR5643663	five period of Gastrodia elata	38.850
	SRR5643664	five period of Gastrodia elata	39.870
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	39.440
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	33.780
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	50.840
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	41.450
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	35.830
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	41.580
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	40.290
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	37.640
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	34.110
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	35.070
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	37.860
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	37.860
SRP279888	Gastro	Gastrodia elata tuber	30.94
	Juven	Juvenile tuber	73.74
	Mother_Gastro	Mother tuber of Gastrodia elata	232.87
	Mother_Juven	Mother tuber of Juvenile	374.09