Detail information of GWHGAAEX006839/evm.TU.scaffold_19.172


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|284166310|ref|YP_003404589.1|3.00E-57pectinesterase [Haloterrigena turkmenica DSM 5511]
nrgi|672178429|ref|XP_008809346.1|0PREDICTED: probable pectinesterase 8 [Phoenix dactylifera]
Swissprottr|O23038|PME8_ARATH5.00E-167Probable pectinesterase 8 (Precursor)
trEMBLtr|A0A061DLD1|A0A061DLD1_THECC5.00E-177Pectinesterase {ECO:0000256|RuleBase:RU000589}
TAIRAT1G053102.00E-166Pectin lyase-like superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000002043289254334831-
Transcript Sequence

Network for GWHGAAEX006839

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01095.18Pectinesterase713653.10E-70
Protein Sequence

Gene family

Gene familysubfamily
Carbohydrate-Active enzymes FamilyCE8

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0042545Biological Processcell wall modification
GO:0030599Molecular Functionpectinesterase activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms0.220
SRR2545915Juvenile tuber0.000
SRP108465SRR5643513five period of Gastrodia elata0.310
SRR5643514five period of Gastrodia elata1.110
SRR5643515five period of Gastrodia elata0.950
SRR5643524five period of Gastrodia elata1.810
SRR5643525five period of Gastrodia elata0.000
SRR5643528five period of Gastrodia elata0.080
SRR5643658five period of Gastrodia elata0.000
SRR5643659five period of Gastrodia elata0.250
SRR5643660five period of Gastrodia elata0.210
SRR5643661five period of Gastrodia elata0.280
SRR5643662five period of Gastrodia elata0.140
SRR5643663five period of Gastrodia elata0.000
SRR5643664five period of Gastrodia elata0.320
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_10.690
SRR6049655Rhizomagastrodiae_C368-T10_good_10.320
SRR6049656Rhizomagastrodiae_C368-T07_good_10.800
SRR6049657Rhizomagastrodiae_C368-T07_good_10.260
SRR6049658Rhizomagastrodiae_C368-T04_good_10.670
SRR6049659Rhizomagastrodiae_C368-T04_good_11.100
SRR6049660Rhizomagastrodiae_C368-T01_good_10.640
SRR6049661Rhizomagastrodiae_C368-T04_good_10.570
SRR6049662Rhizomagastrodiae_C368-T01_good_11.130
SRR6049663Rhizomagastrodiae_C368-T01_good_10.950
SRR6049664Rhizomagastrodiae_C368-T10_good_10.180
SRR6049665Rhizomagastrodiae_C368-T10_good_10.180
SRP279888GastroGastrodia elata tuber 0.05
JuvenJuvenile tuber0.23
Mother_GastroMother tuber of Gastrodia elata 1.19
Mother_JuvenMother tuber of Juvenile 0.38