Detail information of GWHGAAEX006841/evm.TU.scaffold_19.175


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|743767961|ref|XP_010914253.1|0PREDICTED: polygalacturonase QRT3-like [Elaeis guineensis]
Swissprottr|O49432|QRT3_ARATH5.00E-169Polygalacturonase QRT3 (Precursor)
trEMBLtr|B4FAQ3|B4FAQ3_MAIZE2.00E-179Uncharacterized protein {ECO:0000313|EMBL:ACF79196.1, ECO:0000313|EnsemblPlants:GRMZM2G045596_P01}
TAIRAT4G200502.00E-168Pectin lyase-like superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000002043564814359628-
Transcript Sequence

Network for GWHGAAEX006841

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module4

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF12708.6Pectate_lyase_3762995.40E-09
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
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Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms3.070
SRR2545915Juvenile tuber3.360
SRP108465SRR5643513five period of Gastrodia elata25.900
SRR5643514five period of Gastrodia elata20.790
SRR5643515five period of Gastrodia elata22.290
SRR5643524five period of Gastrodia elata27.920
SRR5643525five period of Gastrodia elata7.470
SRR5643528five period of Gastrodia elata21.930
SRR5643658five period of Gastrodia elata6.590
SRR5643659five period of Gastrodia elata9.310
SRR5643660five period of Gastrodia elata13.600
SRR5643661five period of Gastrodia elata11.620
SRR5643662five period of Gastrodia elata10.920
SRR5643663five period of Gastrodia elata5.210
SRR5643664five period of Gastrodia elata6.060
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_111.210
SRR6049655Rhizomagastrodiae_C368-T10_good_114.990
SRR6049656Rhizomagastrodiae_C368-T07_good_134.830
SRR6049657Rhizomagastrodiae_C368-T07_good_17.530
SRR6049658Rhizomagastrodiae_C368-T04_good_18.880
SRR6049659Rhizomagastrodiae_C368-T04_good_17.280
SRR6049660Rhizomagastrodiae_C368-T01_good_112.100
SRR6049661Rhizomagastrodiae_C368-T04_good_110.470
SRR6049662Rhizomagastrodiae_C368-T01_good_124.380
SRR6049663Rhizomagastrodiae_C368-T01_good_125.550
SRR6049664Rhizomagastrodiae_C368-T10_good_127.740
SRR6049665Rhizomagastrodiae_C368-T10_good_127.740
SRP279888GastroGastrodia elata tuber 8.30
JuvenJuvenile tuber38.40
Mother_GastroMother tuber of Gastrodia elata 269.17
Mother_JuvenMother tuber of Juvenile 235.66