Detail information of GWHGAAEX006842/evm.TU.scaffold_19.176


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG30812.00E-168Vesicle coat complex COPI, epsilon subunit
nrgi|695002944|ref|XP_009382885.1|1.37E-177PREDICTED: coatomer subunit epsilon-1 [Musa acuminata subsp. malaccensis]
Swissprottr|Q9SA78|COPE1_ARATH6.00E-169Coatomer subunit epsilon-1
trEMBLtr|M0S4Q6|M0S4Q6_MUSAM5.00E-178Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr2P03150_001}
TAIRAT1G306302.00E-168Coatomer epsilon subunit

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000002043617314377267-
Transcript Sequence

Network for GWHGAAEX006842

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF04733.13Coatomer_E62884.90E-130
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006890Biological Processretrograde vesicle-mediated transport, Golgi to ER
GO:0005198Molecular Functionstructural molecule activity
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms84.460
SRR2545915Juvenile tuber91.960
SRP108465SRR5643513five period of Gastrodia elata123.080
SRR5643514five period of Gastrodia elata125.400
SRR5643515five period of Gastrodia elata124.840
SRR5643524five period of Gastrodia elata130.810
SRR5643525five period of Gastrodia elata116.900
SRR5643528five period of Gastrodia elata129.140
SRR5643658five period of Gastrodia elata99.770
SRR5643659five period of Gastrodia elata130.800
SRR5643660five period of Gastrodia elata134.100
SRR5643661five period of Gastrodia elata125.900
SRR5643662five period of Gastrodia elata128.960
SRR5643663five period of Gastrodia elata130.330
SRR5643664five period of Gastrodia elata126.600
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1111.090
SRR6049655Rhizomagastrodiae_C368-T10_good_1141.920
SRR6049656Rhizomagastrodiae_C368-T07_good_1160.420
SRR6049657Rhizomagastrodiae_C368-T07_good_192.200
SRR6049658Rhizomagastrodiae_C368-T04_good_198.120
SRR6049659Rhizomagastrodiae_C368-T04_good_191.500
SRR6049660Rhizomagastrodiae_C368-T01_good_191.650
SRR6049661Rhizomagastrodiae_C368-T04_good_190.510
SRR6049662Rhizomagastrodiae_C368-T01_good_1131.360
SRR6049663Rhizomagastrodiae_C368-T01_good_1114.650
SRR6049664Rhizomagastrodiae_C368-T10_good_1156.930
SRR6049665Rhizomagastrodiae_C368-T10_good_1156.930
SRP279888GastroGastrodia elata tuber 149.93
JuvenJuvenile tuber141.45
Mother_GastroMother tuber of Gastrodia elata 159.85
Mother_JuvenMother tuber of Juvenile 160.95