Detail information of GWHGAAEX006850/evm.TU.scaffold_19.188
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|300087469|ref|YP_003757991.1| | 1.00E-136 | ATPase central domain-containing protein [Dehalogenimonas lykanthroporepellens BL-DC-9] |
| KOG | KOG2028 | 0 | ATPase related to the helicase subunit of the Holliday junction resolvase |
| nr | gi|743768034|ref|XP_010914290.1| | 0 | PREDICTED: ATPase WRNIP1 [Elaeis guineensis] |
| Swissprot | tr|Q9FXM3|RFC2_ORYSJ | 2.00E-11 | Replication factor C subunit 2 |
| trEMBL | tr|D7KAP5|D7KAP5_ARALL | 0 | AAA-type ATPase family protein {ECO:0000313|EMBL:EFH66974.1} |
| TAIR | AT1G24290 | 0 | AAA-type ATPase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000020 | 4713271 | 4715168 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX006850
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00004.28 | AAA | 127 | 232 | 1.00E-12 |
| PF16193.4 | AAA_assoc_2 | 268 | 347 | 1.40E-23 |
| PF12002.7 | MgsA_C | 348 | 498 | 3.40E-59 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006260 | Biological Process | DNA replication |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0005524 | Molecular Function | ATP binding |
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 27.400 |
| SRR2545915 | Juvenile tuber | 22.420 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 27.080 |
| SRR5643514 | five period of Gastrodia elata | 25.420 | |
| SRR5643515 | five period of Gastrodia elata | 23.260 | |
| SRR5643524 | five period of Gastrodia elata | 23.660 | |
| SRR5643525 | five period of Gastrodia elata | 49.430 | |
| SRR5643528 | five period of Gastrodia elata | 29.670 | |
| SRR5643658 | five period of Gastrodia elata | 51.590 | |
| SRR5643659 | five period of Gastrodia elata | 39.210 | |
| SRR5643660 | five period of Gastrodia elata | 47.410 | |
| SRR5643661 | five period of Gastrodia elata | 52.750 | |
| SRR5643662 | five period of Gastrodia elata | 51.410 | |
| SRR5643663 | five period of Gastrodia elata | 47.720 | |
| SRR5643664 | five period of Gastrodia elata | 61.350 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 43.720 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 55.010 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 47.420 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 52.220 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 48.100 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 49.010 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 53.460 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 51.410 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 36.150 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 37.670 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 29.870 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 29.870 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 51.33 |
| Juven | Juvenile tuber | 58.42 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 15.06 | |
| Mother_Juven | Mother tuber of Juvenile | 22.59 |