Detail information of GWHGAAEX006853/evm.TU.scaffold_19.192
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|428202997|ref|YP_007081586.1| | 5.00E-15 | WD40 repeat-containing protein [Pleurocapsa sp. PCC 7327] |
| KOG | KOG1787 | 0 | Kinase A-anchor protein Neurobeachin and related BEACH and WD40 repeat proteins |
| nr | gi|743855618|ref|XP_010941517.1| | 0 | PREDICTED: BEACH domain-containing protein lvsC isoform X1 [Elaeis guineensis] |
| trEMBL | tr|M0SH39|M0SH39_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr3P23230_001} |
| TAIR | AT1G58240 | 0 | Unannotated protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000020 | 4758689 | 4864262 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX006853
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module8 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13385.5 | Laminin_G_3 | 1074 | 1245 | 1.70E-10 |
| PF15787.4 | DUF4704 | 1317 | 1593 | 7.50E-75 |
| PF14844.5 | PH_BEACH | 2489 | 2545 | 2.30E-09 |
| PF02138.17 | Beach | 2586 | 2862 | 1.40E-124 |
| PF00400.31 | WD40 | 2998 | 3033 | 0.0001 |
| PF00400.31 | WD40 | 3061 | 3094 | 0.0045 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | DWD |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 90.560 |
| SRR2545915 | Juvenile tuber | 61.820 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 12.970 |
| SRR5643514 | five period of Gastrodia elata | 15.250 | |
| SRR5643515 | five period of Gastrodia elata | 14.160 | |
| SRR5643524 | five period of Gastrodia elata | 13.980 | |
| SRR5643525 | five period of Gastrodia elata | 13.230 | |
| SRR5643528 | five period of Gastrodia elata | 9.750 | |
| SRR5643658 | five period of Gastrodia elata | 11.600 | |
| SRR5643659 | five period of Gastrodia elata | 12.210 | |
| SRR5643660 | five period of Gastrodia elata | 14.880 | |
| SRR5643661 | five period of Gastrodia elata | 11.320 | |
| SRR5643662 | five period of Gastrodia elata | 11.300 | |
| SRR5643663 | five period of Gastrodia elata | 13.770 | |
| SRR5643664 | five period of Gastrodia elata | 16.490 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 15.600 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 11.120 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 15.600 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 17.040 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 17.590 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 20.650 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 17.310 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 17.730 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 12.720 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 13.880 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 11.610 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 11.610 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 15.26 |
| Juven | Juvenile tuber | 25.82 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 14.78 | |
| Mother_Juven | Mother tuber of Juvenile | 28.74 |