Detail information of GWHGAAEX006858/evm.TU.scaffold_19.198
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|434400198|ref|YP_007134202.1| | 2.00E-84 | UDP-3-O-(3-hydroxymyristoyl) N-acetylglucosamine deacetylase [Stanieria cyanosphaera PCC 7437] |
| nr | gi|672107746|ref|XP_008781340.1| | 3.73E-146 | PREDICTED: probable UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 2 isoform X1 [Phoenix dactylifera] |
| Swissprot | tr|Q9FE36|LPXC1_ARATH | 8.00E-113 | Probable UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 1 (Precursor) |
| trEMBL | tr|I1H7X5|I1H7X5_BRADI | 2.00E-126 | Uncharacterized protein {ECO:0000313|EnsemblPlants:BRADI1G69490.1} |
| TAIR | AT1G25190 | 3.00E-99 | Unannotated protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000020 | 4946730 | 4969866 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX006858
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF03331.12 | LpxC | 28 | 308 | 2.20E-88 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | CE11 |
| Carbohydrate-Active enzymes Family | CE11 |
| Carbohydrate-Active enzymes Family | CE11 |
| Carbohydrate-Active enzymes Family | CE11 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K02535 | lpxC | Metabolic pathways | map01100 |
| Lipopolysaccharide biosynthesis | map00540 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0009245 | Biological Process | lipid A biosynthetic process |
| GO:0008759 | Molecular Function | UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 43.980 |
| SRR2545915 | Juvenile tuber | 25.750 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 11.900 |
| SRR5643514 | five period of Gastrodia elata | 11.160 | |
| SRR5643515 | five period of Gastrodia elata | 10.520 | |
| SRR5643524 | five period of Gastrodia elata | 11.200 | |
| SRR5643525 | five period of Gastrodia elata | 14.820 | |
| SRR5643528 | five period of Gastrodia elata | 9.580 | |
| SRR5643658 | five period of Gastrodia elata | 12.680 | |
| SRR5643659 | five period of Gastrodia elata | 13.140 | |
| SRR5643660 | five period of Gastrodia elata | 17.670 | |
| SRR5643661 | five period of Gastrodia elata | 14.350 | |
| SRR5643662 | five period of Gastrodia elata | 17.910 | |
| SRR5643663 | five period of Gastrodia elata | 20.670 | |
| SRR5643664 | five period of Gastrodia elata | 20.310 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 20.100 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 14.170 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 16.390 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 22.500 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 23.200 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 30.110 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 19.880 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 23.670 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 13.940 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 12.850 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 11.890 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 11.890 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 19.61 |
| Juven | Juvenile tuber | 13.11 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 9.57 | |
| Mother_Juven | Mother tuber of Juvenile | 12.39 |