Gene detail

Detail information of GWHGAAEX006859/evm.TU.scaffold_19.199

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG1900	Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170)
nr	gi\|743771858\|ref\|XP_010916220.1\|	PREDICTED: nuclear pore complex protein NUP155 [Elaeis guineensis]
Swissprot	tr\|F4HXV6\|NU155_ARATH	Nuclear pore complex protein NUP155 {ECO:0000303\|PubMed:12034489}
trEMBL	tr\|I1H7X7\|I1H7X7_BRADI	Uncharacterized protein {ECO:0000313\|EnsemblPlants:BRADI1G69510.1}
TAIR	AT1G14850	nucleoporin 155

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000020	5001054	5024086	+

Transcript Sequence
>GWHTAAEX006859 GTTTTTGGTGATGAGCGTCGGCTTCCCTTATCCGTCTCCGCTCGCGCGTTTTTCAAATTCAGGCTAAGGCTAAACCCTCCACACGAGGATTCAAACCCTCCGTCTTCCGCAGACCCCGCCGCCCAATCCTTCTCGCTACACGCCTTGTCGCTCTTCTGTTTTCTGCATCATTCTCGAAGAGCATTAAAACCCTAGCGTTTCAGAAATTCCCTAATCGTTTTAATTTAGGAGCTTCTGAATTTCTAGGGTTCACCTTTCCTCTCATTCTTCACGTCCTGTTTTCATCGTTGTCAAGATATGGCGTGGGAGGATGAGATCGTTGGAGCCGACGTTGCTTCAGCTGGGCTTCACATTAGTGAGTGCATCAGCCGGGACACGGCCAGCCAGCTAGACCTGGAAGAGGCACTGGAGGCTTCTCGGTACACCAGCCACCCTTATTCGCACCATCTTAAAGAGTGGCCTCCTATGGCTGAAGTTCTGGAGACTAGGGAGTTACCATCCGCGCTAATTGAAAGATATAGTGGCGGCGGCGGCGAAGGTACAGCTTTGTGTGGAATTTTCCCAGAGATACACCGAGCATGGGCTTCTGTCGATAATTCTTTATTTATCTGGCTATTCAATAAACGGACTGGACAGTGTACTGAATACAGTGGAGTTGAACATTCCATTTGTGCTGTTGGTCTTGCTAGGGTGAAGCCTAGCATATTTGTTGAAGCAATTCAATATATTCTGGTGCTGGCAACTCCAGTGGAGATTTTTCTTGTTGGAGTGTGTTGCACAACTAGTGCTGATGACACAGATCCATATGCTGAGATTTCTCTGCAACCATTACCTGAATATACAATACCATCAGATGGTGTTACAATGACATGTGTAGCCTGCACGGATAAGGGTCAGATTTATGTTTCTGGTCGTGATGGGCATATTTACGAGATACAGTACTCAGTTGGCTCATTATGGCGTAAGACTTGTAGTAAAATTTGCCTGACAGCTGGTTTGGGCACTTTTCTTTCAAGATGGATTCTGCCAGATGCTTTTAAGTTTGGAGCTGTAGATCCAATTGTTGATATGGTTATTGACAATGAAAGCCATGTTATGTATGCTCGAACGGAGGGCATGAAGCTACAGGTCTATGATTTGGGAGTTGATGGTGGTGGCCCGTTTAAAAAAATTGCTGATGAGCGAAATTTAATTGATCCACGGGATTCTCATGGAGGCAGACGGGCTGCATCAAGAGTGGTTGCTAGGGCTGCTAAACCATCAATCATTTCTATTGCACCTTTGTCCAATCTGGAATCAAAACTACTGCATATGGTTGCTGTTTTATCGGATGGGAGAAGGCTATACATTTCAACTTTACCGTCAAATATTAATAATGCATCTGTAAGTTTAACGGACCTCGGGAAACCTGTTCAGCGGCCAACATGTTTAAAGGTTGTAGCAACAAGGCCCTCGCCACCCTTGGGAATTGGCAGCGGGCCTGCCTTTGGTGCCTTACCTACTGCAAGTAGAGCTCAACCTGAGGACATGGCCTTGAATGTTGAGACAGCTTTCTATTCTGCAGGGGTGCTGGTTCTTTCAGATTTGTCTGCTCCATCTGCTTCCTCTCTTGTGATTGTGAATCGTGATTCCACCACTCAGCTATCTCTACCCAGTAACTATGGAATTACTTCAAGAACCTCTCGTGCTTTGCGTGAACTAGTTTCCTCCTTGCCGCTGGAGGGTCGAATGCTGTGCGCCACTGATGTTTTACCTCTACCAGATACTGTGGCCACAGTGCACTCATTGTACTTTGATTTGGATGCTTATGAAGGATTTAGAGAATCATGTGAAAAAGCTTCTGTGAAATTGTGGGCCCGAGGAGACCTTTCGACTCAACACATTCTACCGAGGAGAAAAGTTATTGTTTTTAGCACTATGGGTTTGACGGAGATTGCCTTTAATAGGCCTGTGGACATTTTGAGAAGACTTTTTGAGTCTAATGCACCAAGGCTGCAAATTGAAGAGTTTTTCAATAGATTTAGTGCTGGAGAGGCTGCTGCAATGTGCTTGATGTTGGCAGCAAAACTAATTTCTGATGAAGAGAATGTAATAAGCAATTCGGTTTCTGAGAGGGCAGCTGAAACATTTGAAGATCCCGGAATTGTTGGTATGCCACAGTTTGAAAGCAATGCTGTTTTGTCAAGTGTTAGGGCCTCTGCTGGAGGCTTCAGCATGGGACAAGTGGTTCCAGAGGTAGAGCCTATATTTTCTGGTGCTCATGAAGGTCTTTGTTTATGTGCATCTAGGCTGCTTTTTCCTCTGTGGGAATTTCCAGTCATGATTGTCCAAAGGGAGACATGTTCTGAAGAAGGGGTCATCTGTTGCAGACTTCCCAGTACTGCGTTGCAGGTTTTAGAAAGTAAAGTTCGTTCTCTCGAACAATTTTTACGGTCTAGAAGAAACAAAAGAAGGGGACTTTATGCTTATGTTGCTGGCAGAGGAGATTTTACTGGCTCAATTCTATATAATGCACATTCTAATATTGAAACTATCAGTCAAAATGACCGTAGGAGCCTTTTTAGAAGTGGTGGTTCTGTAGATACTGCTTCAAATAAAAAACAGAGGCTTCCTTACTCTGGTGCTGAGATGGCCGCAATGGAGGTGAGGGCGATGGAGTGCCTAAGAAGACTTCTTCGAAGGTCCAGTGAAGCACTTTTCTTGCTACAAATTATTGGTCATCATCATGTAACACGCTTGGTTCAGGCCTTAGATAGCAATGTTCAGCAAAAATTAGTTAAACTGACGTTCAATCAGTTAGTGTGTTCAGAAGAGGGTGATCAGCTTGCTATGCAACTAATTTCTGGGCTGATGGAGTATTATAGTGGCACTGATGGCAGAGGCACTGTTGATGAGATTAGTGCAAAACTTAGGGAAGGCTGTCCGAGCTACTTCAATGAATCTGACTACAAGTACTTTCTTGCGGTTGAGTGTCTGGAAAGAGCTACCAGGTCATGCGATGCTGATGAAAGGGAGAATCTCGCAAGAACAGCTTTTAATTATTTAACCAAAGTTCCAGAATCTACAGATTTAAGAGTTATATGCAAGCGATTTGAGGATCTAAGATTTTATGAAGCTGTTGTACGGTTATCATTGCAAAAAGCGCAAGCTCTCGATCCCCAAGGCGATGCTTTGAATGATAAAATTGATTCTGGACGCCGCGAAAGTGCACTTGCTCTACGAGAACAATGTTATGAAACAGTCACGAACGCCCTTCGTTCTTTGAAATGCGCAGTCGGCAGAGTTTCTGGTTCAGGAATTATCCTCGATACGACAGCTCAAGACAGATACATACGCCAGATCATTCAACTCGGTGTTCAGTGGCCTGATTTGGCTTTTCATGAGCATTTGTATAGGTCATTGATTGAGCTTGGCCTTGAAGAAGAATTGCTGGAATACGGGGGCTCTGATTTGGTTTCATTTCTGCAGAGTGCTGGCAGAAACCCACTTCAAGAGGTACAAGCCGTTTCTGGTCTAACGCCAATGGCAATGGCAAATGACCTAGAGGCGCCAATACCGCCCTCCCAGACCAAGCACCTTGAGCTCCTTGCAAAGTATTACGTTAAGAACCGGCAGCACGCCCTAGCTGCTCATGTGCTCTATAGACTGGCAGAAAGACATTGCTCTGGCAGCTGTGCAGATGCTCTCAGTCTGGAGCAGAGGCGCCAGTATTTGAGCAATGCTGTTCTGCAGGCTAAGAGTGCGACTAGCATCAGCAGTTCAATTAAAAATACTGTTGATAATGGCTTATTGGACATGCTCGAAGCCAAACTCATTGTTCTTCGATTTCAAGCGAGGATTAAGGAGGAGTTAGAGTCCGCTGCGCTTAAACTAGAGGCAGGGTTTCAGGGAAATGCCGACTTGCACGCAGATGATCCGTTTCCACATGGAAATCTGGTTTATGATGCCAGCACTGCTAAGCTTGCTAGGGATAAGGCCAAGGAGCTGGAGTTGAATCTCAAGAGCATTACCCAGTTATACAATGATTACTCTGTTCCGTTTCAGCTTTGGGAGATATGCCTGGAAATGCTAAACTTTGCAAACTACTCTGGAGACGCGGACAGCAAAGTGGTAAGAGAAACATGGGCTAGACTCGTCGACCAGGCTCTCTCAAGAGGCGGCGTCGCTGAAGCTTGCTCCGTTATTAAAAGGATGGGATCGAATCTTCATCCCGTGGATGGATCCTTCATACCGCTGGACACATTATGCCTCCATCTCGAGAAGTCGGCTATGGAGCGATTGTCGTCCGGGGCGGAAACTATGGGAGACGAGGAAATAGCGAGAAGCCTTCTGGCGGCCTGCCGTGGCAGACACGAGGCGGTGCTGTCTGTGTACGATCATCTTCTATCGAGCGGGACGATCGTTGTTTCGCAGCATCTGAGGCTGCGCCTTCTGAGGTCGGCCCTGGCTGTGCTTCGCGAATGGGTTATGTCCGCCGTTGCCGATAAGCTGGGCACCACCGCGGCCGGAGCTTCCTTCCTATTCTCCGGAGCTTCTGCGGTGGACCACGGGTCGGCTGTGCGGCGAGGAATCCGCGATAAGATAGCCAGCGCCACGAACCGGTACATGACGGAAGCGCGCCGGCTTGCGTTGCCGCACAATCAGACCGAACCGGTCTACCGCGGGTTTAAAGAGATCGATGAGCAGCTTTCGATGCCGCCCTCTTTCCCGCAGTATTATTAGTTATTTGGAAAATAGTATTATTCTTAACAAATAATTTGTAAAAATAGAGAAAAAGATTAGTGTAAAAGTATTATTATTATTAATAAAGAATGTGGGCTTTATGAAATTGGAT

Network for GWHGAAEX006859

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08801.10	Nucleoporin_N	54	543	2.50E-72
PF03177.13	Nucleoporin_C	822	1280	7.20E-09

Protein Sequence

>GWHPAAEX006859
MAWEDEIVGADVASAGLHISECISRDTASQLDLEEALEASRYTSHPYSHHLKEWPPMAEVLETRELPSALIERYSGGGGEGTALCGIFPEIHRAWASVDNSLFIWLFNKRTGQCTEYSGVEHSICAVGLARVKPSIFVEAIQYILVLATPVEIFLVGVCCTTSADDTDPYAEISLQPLPEYTIPSDGVTMTCVACTDKGQIYVSGRDGHIYEIQYSVGSLWRKTCSKICLTAGLGTFLSRWILPDAFKFGAVDPIVDMVIDNESHVMYARTEGMKLQVYDLGVDGGGPFKKIADERNLIDPRDSHGGRRAASRVVARAAKPSIISIAPLSNLESKLLHMVAVLSDGRRLYISTLPSNINNASVSLTDLGKPVQRPTCLKVVATRPSPPLGIGSGPAFGALPTASRAQPEDMALNVETAFYSAGVLVLSDLSAPSASSLVIVNRDSTTQLSLPSNYGITSRTSRALRELVSSLPLEGRMLCATDVLPLPDTVATVHSLYFDLDAYEGFRESCEKASVKLWARGDLSTQHILPRRKVIVFSTMGLTEIAFNRPVDILRRLFESNAPRLQIEEFFNRFSAGEAAAMCLMLAAKLISDEENVISNSVSERAAETFEDPGIVGMPQFESNAVLSSVRASAGGFSMGQVVPEVEPIFSGAHEGLCLCASRLLFPLWEFPVMIVQRETCSEEGVICCRLPSTALQVLESKVRSLEQFLRSRRNKRRGLYAYVAGRGDFTGSILYNAHSNIETISQNDRRSLFRSGGSVDTASNKKQRLPYSGAEMAAMEVRAMECLRRLLRRSSEALFLLQIIGHHHVTRLVQALDSNVQQKLVKLTFNQLVCSEEGDQLAMQLISGLMEYYSGTDGRGTVDEISAKLREGCPSYFNESDYKYFLAVECLERATRSCDADERENLARTAFNYLTKVPESTDLRVICKRFEDLRFYEAVVRLSLQKAQALDPQGDALNDKIDSGRRESALALREQCYETVTNALRSLKCAVGRVSGSGIILDTTAQDRYIRQIIQLGVQWPDLAFHEHLYRSLIELGLEEELLEYGGSDLVSFLQSAGRNPLQEVQAVSGLTPMAMANDLEAPIPPSQTKHLELLAKYYVKNRQHALAAHVLYRLAERHCSGSCADALSLEQRRQYLSNAVLQAKSATSISSSIKNTVDNGLLDMLEAKLIVLRFQARIKEELESAALKLEAGFQGNADLHADDPFPHGNLVYDASTAKLARDKAKELELNLKSITQLYNDYSVPFQLWEICLEMLNFANYSGDADSKVVRETWARLVDQALSRGGVAEACSVIKRMGSNLHPVDGSFIPLDTLCLHLEKSAMERLSSGAETMGDEEIARSLLAACRGRHEAVLSVYDHLLSSGTIVVSQHLRLRLLRSALAVLREWVMSAVADKLGTTAAGASFLFSGASAVDHGSAVRRGIRDKIASATNRYMTEARRLALPHNQTEPVYRGFKEIDEQLSMPPSFPQYY

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14312	NUP155, NUP170, NUP157	RNA transport	map03013

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	24.980
SRP064423	SRR2545915	Juvenile tuber	20.880
SRP108465	SRR5643513	five period of Gastrodia elata	16.270
	SRR5643514	five period of Gastrodia elata	13.320
	SRR5643515	five period of Gastrodia elata	11.330
	SRR5643524	five period of Gastrodia elata	12.600
	SRR5643525	five period of Gastrodia elata	11.190
	SRR5643528	five period of Gastrodia elata	8.290
	SRR5643658	five period of Gastrodia elata	11.660
	SRR5643659	five period of Gastrodia elata	17.230
	SRR5643660	five period of Gastrodia elata	19.200
	SRR5643661	five period of Gastrodia elata	17.140
	SRR5643662	five period of Gastrodia elata	16.850
	SRR5643663	five period of Gastrodia elata	17.100
	SRR5643664	five period of Gastrodia elata	15.700
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	21.740
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	15.850
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	21.470
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	25.660
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	31.400
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	34.930
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	27.340
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	30.950
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	23.510
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	27.590
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	17.820
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	17.820
SRP279888	Gastro	Gastrodia elata tuber	16.19
	Juven	Juvenile tuber	24.50
	Mother_Gastro	Mother tuber of Gastrodia elata	13.73
	Mother_Juven	Mother tuber of Juvenile	19.32