Detail information of GWHGAAEX006861/evm.TU.scaffold_19.201
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|325959168|ref|YP_004290634.1| | 1.00E-173 | glutamate decarboxylase [Methanobacterium sp. AL-21] |
| KOG | KOG1383 | 0 | Glutamate decarboxylase/sphingosine phosphate lyase |
| nr | gi|743839475|ref|XP_010937014.1| | 0 | PREDICTED: glutamate decarboxylase 1 [Elaeis guineensis] |
| Swissprot | tr|Q42521|DCE1_ARATH | 0 | Glutamate decarboxylase 1 |
| trEMBL | tr|I1GNX4|I1GNX4_BRADI | 0 | Glutamate decarboxylase {ECO:0000256|RuleBase:RU361171} |
| TAIR | AT5G17330 | 0 | glutamate decarboxylase |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000020 | 5120948 | 5126087 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX006861
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module7 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00282.18 | Pyridoxal_deC | 34 | 380 | 1.30E-106 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0019752 | Biological Process | carboxylic acid metabolic process |
| GO:0006536 | Biological Process | glutamate metabolic process |
| GO:0003824 | Molecular Function | catalytic activity |
| GO:0004351 | Molecular Function | glutamate decarboxylase activity |
| GO:0030170 | Molecular Function | pyridoxal phosphate binding |
| GO:0016831 | Molecular Function | carboxy-lyase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 48.510 |
| SRR2545915 | Juvenile tuber | 47.660 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 108.750 |
| SRR5643514 | five period of Gastrodia elata | 72.240 | |
| SRR5643515 | five period of Gastrodia elata | 80.370 | |
| SRR5643524 | five period of Gastrodia elata | 108.880 | |
| SRR5643525 | five period of Gastrodia elata | 24.450 | |
| SRR5643528 | five period of Gastrodia elata | 9.960 | |
| SRR5643658 | five period of Gastrodia elata | 30.170 | |
| SRR5643659 | five period of Gastrodia elata | 23.200 | |
| SRR5643660 | five period of Gastrodia elata | 42.260 | |
| SRR5643661 | five period of Gastrodia elata | 51.330 | |
| SRR5643662 | five period of Gastrodia elata | 39.860 | |
| SRR5643663 | five period of Gastrodia elata | 15.370 | |
| SRR5643664 | five period of Gastrodia elata | 12.330 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 93.690 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 67.840 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 95.710 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 123.350 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 133.010 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 156.050 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 104.680 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 143.850 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 91.150 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 70.200 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 107.070 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 107.070 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 97.44 |
| Juven | Juvenile tuber | 235.96 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 157.28 | |
| Mother_Juven | Mother tuber of Juvenile | 233.99 |