Gene detail

Detail information of GWHGAAEX006862/evm.TU.scaffold_19.203

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|193215522\|ref\|YP_001996721.1\|	2.00E-133	cyclic nucleotide-binding protein [Chloroherpeton thalassium ATCC 35110]
KOG	KOG1965	0	Sodium/hydrogen exchanger protein
nr	gi\|672110941\|ref\|XP_008798100.1\|	0	PREDICTED: sodium/hydrogen exchanger 8 [Phoenix dactylifera]
Swissprot	tr\|Q9LKW9\|NHX7_ARATH	0	Sodium/hydrogen exchanger 7
trEMBL	tr\|M0TR20\|M0TR20_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr8P16670_001}
TAIR	AT2G01980	0	sodium proton exchanger, putative (NHX7) (SOS1)

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000020	5219164	5332464	-

Transcript Sequence
>GWHTAAEX006862 AGTGATTGAGACCCATAGTCATGTTCGTTCTCGTTCGTTAAGCTCTGTACTATTATACTCTTTATAGTCGCCCTGCTCGGTTCCCTCCCGGTCTCGTGTAACCATCCTCGTGGCAGCTTCAGTTGGAACCAGTCCTCATCGCAGAGTCACCGTCGGCCACATCTCTAACAGCACCCTCCTTTAATTTCAGGCGAGTTGCCGCGGCATTGGCTGAGGATCCCGAGGCAGCATCCCCGTGCCAAAGGGAATGACTTCGATAGTGGAGTGCCCTCTTTCCTATCAGCAAGTTGGGACGATTCAAGAAAACACGGGAGAGCCGCAGGACGCTGTTATCTTCTTTGGCATTTCGTTGGTATCGGGGATTGCTTGCCGACATGTTCTCAAGGGCACTAGAGTACCTTACACCGTCGCTCTTCTCATTGCCGGCATTGTTATGGGTTCGTTGGAGTATGGAACTCATCATGGTTTGGGAAAAGTTGGGAGAGGGATACGTATATGGGCAAATATCAATCCTGATTTGCTGTTGTTTGTTTTTCTTCCCGCTCTTCTGTTTGAAAGTTCATTTGCAATGGAAGTGCATCAAATTAAGAGATGTTTAATGCAAATGCTGCTACTTGCTGGACCCGGTGTTGTGATTTCTACCTTTTTTCTGGGGACATTATTGAGGTGTACATTTCCGTATGGGTGGAACTACAAGGTGTCTTTACTGTTGGGAGGACTCCTTAGTGCTACAGATCCTGTTGCAGTGGTGGCATTACTGAAAGAATTGGGAGCAAGTAAAAAACTAAGCACAATAATAGAAGGAGAATCCTTAATGAATGATGGAACTGCAATTGTTGTGTATCAGTTGTTCTACAAGATGGTGCTTGGGAAGAGATTCAATGTTGGAGAGATTATCCAATTCCTTTCACGTGTCTCATTGGGAGCTGTTGCTTTGGGTGTTGCTTTCGGAATAGCCTCTGTACTATGGCTTGGGTATATTTTCAATGATGCAGTTATCGAGATCGCCTTAACTCTTGCAGTCAGCTACATAACATTTTATGCTGCTCAAGAAGGGGCTGATGTTTCAGGAGTTTTGGCAGTGATGACTTTGGGCATGTTCTTTGCAGCGGTAGCCAGAACAGCTTTCAAGGGTGATAGTCAACTGAGCTTACATCATTTCTGGGAAATGATTGCTTATATTGCAAACACCTTGATCTTTATCTTAAGTGGAGTTGTTATTGCTGAAGGTATTTTGAACAGCAACGATCATTTTGAATGGCAAGGAAGCTCTTGGGGATACCTGCTTCTGCTTTATGTTTATGTTCAGTTCTCACGCATTATAGTTGTTGGGATATTATATCCTTTTCTGCATCATTCTGGATATGGTTTTGACTTGAAAGAATCTGTGATATTGGTTTGGTCTGGGCTACGAGGAGCGGTGGCTTTGTCACTCTCTCTTTCTGTAAAACAAGCCAGTGGTGTAAACCAGCCTCTTCTAACCAGAGAACTTGGAATCTTGTTTGTTTTCTTTACTGGTGGAATTGTGTTCCTGACACTGATTATCAATGGCTCAACCACCCAGTTCCTTTTACACTTTCTGGGTATGGATAAATTATCAGCTGCAAAGATTCGCATTTTGAACTACACAAAATATAAAATGTTGAACAAGTCATTGGAAGCTTTTGGTGAGCTTGGAGATGATGAAGAACTTGGACCTGCTGATTGGCCAACTGTGCGAAGATATATAACTTGTTTAAGTGAGCTGGAAATAGACGAGCATCCTTATGCTGTAACTGAGGGACAGGATCATCTAAAAAGAATGAACCTAAGTGACATGCGTGTGCGTCTTCTGAATGGTGTACAAGCTGCATATTGGGCTATGCTTACTGAAGGAAGGATAACTCAAAGCACTGCAATTTTCTTAATGAGTTCTGTAGATGAAGCTATGGATATGGTGTCTACTGAGCCTTTAAGCGATTGGAAAAGGTTAAAGTCTAACGTTCATTTTCCAGGGTATTATAAATTTCTTCAGATGAGTAGACTTCCACGGCGGTTGGTCACCTATTTTACAGTGGAAAGATTGGAGTCATCATGCTCACTATGTGCTGCCTTTCTTCGTGCACATAGAATAGCTAGGCGGCAACTTCATGAATTTATTGGTGATAGTGAGATTGCTTCTACGATTATTAATGAAAGCAGTGAAGAGGAAGAAGATGCGAGAAAGTTCTTGGAAGATGTCCGAATTCATTTACCTCAGGTGCTCCGTGTTGTGAAGACAAGACAAGCAACTTATTCAATACTGAAACATTTGAGTGAATATGTTCAAAATCTTGAGAAGGTTGGACTTTTAGAAGAAAAAGAGATTGTTCAACTTAATGATTCTATACAGGGAGACTTCAAAAGGCTTTTAAGGAATCCCCCTTTAGTAAAAATGCCAAAAGCGAGTGATCTCATTGGTTCACATCCTTTGCTTGGAGCTCTTCCTGTTGATGTAGTTGAGCCCCTTGGTAGGTCTACAAAAGAACTAATGAAACTATGCGGCACAACCTTGTACAAGGAGGGTTCTAAGCCAAAAGGGATTTGGCTTATTTCAATGGGCGTTGTTAAGTGGGATAGTTGGAGTCTCCGTAGCAAGCATTCATTGCATCCTACTTTCTCTCATGGAAATACTTTAGGACTATATGAAGTTCTTGTTGGAAAGCCTTATATGTGTGACATGATTGCAGATTCTGTTGTTCACTGCTTCTTTTTTGACAGTGCTAAATTTCTTTCCCTTGTCAGATCGAACTCTGCTATAGAAGTATTTTTGTGGCAGGAAAGTTCATTAATTTTATCCAAAATCCTTCTTCCTCAAATATTTGAAACAGTGCCTATGCATGAGCTAAGAGCCATTGTTGCTGAAAGATCATCAATGAATATATATCTAAGAGGAGAAACCATAGAGATCAGACCAAATTTTATAGGCCTTTTATTGGAAGGGTTTGTAAGGAATGAAGAGGCTCAGCAAGATCTTATTACATCCCCTGCAGCATTACTACCTTCACATTCAAATCTACCCATAATTGGTTCAGGATTTACAAATGTAGGTTTCAAAAACACGAGCTTTTGCCACTTCGGCTCCCGTTTTGACGTTGAAGAAAGGTCCCGGGTGATATTTTTTGATCGAAGTGCCATAGAACTGGACAGTCCTCATCAAAAGAGAATGGTTTCGAGGTTGTCGCAGCCCATGGATCCAGCGCGCCCCTGTACAAGGGACCTAGAAGACCTCATGAGTTGGCCTGAAAATTTCTTTAGAACTAGGAGCTCTAATGTGTCCTATGGCGCACCAGAAACAAGTTTCTCAGCCAGAGCCATGGAACTGAGCTTATATGGAAGGATGATGAACCACACACGATGGTATTCTAGATGTTCATCGCCGCTGAGCGGGCAAAATCACAGCTTGTCGTATCCCGGAGTACCGACGACAACGGGGACGGAAACCAATGCCCTGCGCTTTAATGCGGCGTATTCTGAAGGGGACGGCTTGAACGGCCAAAGGCTGGCTGGCCGTCGAGAGGTTTCAAGGATAGCGCTTTTGCCGCCCGGGAGGGCGAGGATGAGAGGGAGGAATTATGAAGGAGGGAATGAGTCGAGTGATGATTCAACGGAGGAAGTGATTGTTCAGATTGATTCTCCAAGCACTCTTTCTTTCCGCCATGATTCTTGAGATGTAAATATCATGTGCTGTGATGTGTGTTATACAAAGTCTTGAGAACCTGCTCAGGATTTTTAAATTATTTTTATTAACGTGTTAAAGGAAGAATATATTAATATTTTTTATAATTTTAATTCAATATTATTCTGTTTGATTTGTTCCTTTACCACAACTCATCTAA

Network for GWHGAAEX006862

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00999.20	Na_H_Exchanger	28	442	1.10E-62

Protein Sequence

>GWHPAAEX006862
MTSIVECPLSYQQVGTIQENTGEPQDAVIFFGISLVSGIACRHVLKGTRVPYTVALLIAGIVMGSLEYGTHHGLGKVGRGIRIWANINPDLLLFVFLPALLFESSFAMEVHQIKRCLMQMLLLAGPGVVISTFFLGTLLRCTFPYGWNYKVSLLLGGLLSATDPVAVVALLKELGASKKLSTIIEGESLMNDGTAIVVYQLFYKMVLGKRFNVGEIIQFLSRVSLGAVALGVAFGIASVLWLGYIFNDAVIEIALTLAVSYITFYAAQEGADVSGVLAVMTLGMFFAAVARTAFKGDSQLSLHHFWEMIAYIANTLIFILSGVVIAEGILNSNDHFEWQGSSWGYLLLLYVYVQFSRIIVVGILYPFLHHSGYGFDLKESVILVWSGLRGAVALSLSLSVKQASGVNQPLLTRELGILFVFFTGGIVFLTLIINGSTTQFLLHFLGMDKLSAAKIRILNYTKYKMLNKSLEAFGELGDDEELGPADWPTVRRYITCLSELEIDEHPYAVTEGQDHLKRMNLSDMRVRLLNGVQAAYWAMLTEGRITQSTAIFLMSSVDEAMDMVSTEPLSDWKRLKSNVHFPGYYKFLQMSRLPRRLVTYFTVERLESSCSLCAAFLRAHRIARRQLHEFIGDSEIASTIINESSEEEEDARKFLEDVRIHLPQVLRVVKTRQATYSILKHLSEYVQNLEKVGLLEEKEIVQLNDSIQGDFKRLLRNPPLVKMPKASDLIGSHPLLGALPVDVVEPLGRSTKELMKLCGTTLYKEGSKPKGIWLISMGVVKWDSWSLRSKHSLHPTFSHGNTLGLYEVLVGKPYMCDMIADSVVHCFFFDSAKFLSLVRSNSAIEVFLWQESSLILSKILLPQIFETVPMHELRAIVAERSSMNIYLRGETIEIRPNFIGLLLEGFVRNEEAQQDLITSPAALLPSHSNLPIIGSGFTNVGFKNTSFCHFGSRFDVEERSRVIFFDRSAIELDSPHQKRMVSRLSQPMDPARPCTRDLEDLMSWPENFFRTRSSNVSYGAPETSFSARAMELSLYGRMMNHTRWYSRCSSPLSGQNHSLSYPGVPTTTGTETNALRFNAAYSEGDGLNGQRLAGRREVSRIALLPPGRARMRGRNYEGGNESSDDSTEEVIVQIDSPSTLSFRHDS

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0055085	Biological Process	transmembrane transport
GO:0006812	Biological Process	cation transport
GO:0015299	Molecular Function	solute:proton antiporter activity
GO:0016021	Cellular Component	integral component of membrane

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	6.030
SRP064423	SRR2545915	Juvenile tuber	6.610
SRP108465	SRR5643513	five period of Gastrodia elata	6.970
	SRR5643514	five period of Gastrodia elata	6.110
	SRR5643515	five period of Gastrodia elata	6.470
	SRR5643524	five period of Gastrodia elata	5.810
	SRR5643525	five period of Gastrodia elata	9.010
	SRR5643528	five period of Gastrodia elata	5.780
	SRR5643658	five period of Gastrodia elata	5.900
	SRR5643659	five period of Gastrodia elata	5.750
	SRR5643660	five period of Gastrodia elata	6.830
	SRR5643661	five period of Gastrodia elata	5.690
	SRR5643662	five period of Gastrodia elata	5.880
	SRR5643663	five period of Gastrodia elata	7.560
	SRR5643664	five period of Gastrodia elata	6.610
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	5.210
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	2.930
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	5.000
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	4.630
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	3.470
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	3.510
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	4.350
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	3.470
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	5.120
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	4.120
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	5.010
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	5.010
SRP279888	Gastro	Gastrodia elata tuber	7.59
	Juven	Juvenile tuber	9.03
	Mother_Gastro	Mother tuber of Gastrodia elata	4.94
	Mother_Juven	Mother tuber of Juvenile	7.74