Detail information of GWHGAAEX006864/evm.TU.scaffold_19.206
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|190570926|ref|YP_001975284.1| | 2.00E-07 | ankyrin repeat domain protein [Wolbachia endosymbiont of Culex quinquefasciatus Pel] |
| KOG | KOG0504 | 4.00E-55 | FOG: Ankyrin repeat |
| nr | gi|731419544|ref|XP_010661058.1| | 1.19E-88 | PREDICTED: uncharacterized protein LOC100264593 isoform X6 [Vitis vinifera] |
| trEMBL | tr|A5B3R2|A5B3R2_VITVI | 8.00E-88 | Putative uncharacterized protein {ECO:0000313|EMBL:CAN60905.1} |
| trEMBL | tr|A5B3R2|A5B3R2_VITVI | 1.00E-27 | Putative uncharacterized protein {ECO:0000313|EMBL:CAN60905.1} |
| TAIR | AT3G28880 | 4.00E-55 | Ankyrin repeat family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000020 | 5450540 | 5470833 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX006864
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF12796.6 | Ank_2 | 423 | 500 | 1.00E-09 |
| PF12872.6 | OST-HTH | 631 | 702 | 2.30E-15 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | C3H |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
| GO:0046872 | Molecular Function | metal ion binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 4.780 |
| SRR2545915 | Juvenile tuber | 2.760 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 1.680 |
| SRR5643514 | five period of Gastrodia elata | 0.580 | |
| SRR5643515 | five period of Gastrodia elata | 3.310 | |
| SRR5643524 | five period of Gastrodia elata | 0.600 | |
| SRR5643525 | five period of Gastrodia elata | 4.970 | |
| SRR5643528 | five period of Gastrodia elata | 3.770 | |
| SRR5643658 | five period of Gastrodia elata | 1.580 | |
| SRR5643659 | five period of Gastrodia elata | 1.300 | |
| SRR5643660 | five period of Gastrodia elata | 1.090 | |
| SRR5643661 | five period of Gastrodia elata | 1.650 | |
| SRR5643662 | five period of Gastrodia elata | 3.650 | |
| SRR5643663 | five period of Gastrodia elata | 5.040 | |
| SRR5643664 | five period of Gastrodia elata | 3.720 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 0.500 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 0.880 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 0.590 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 0.480 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 0.880 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.790 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 1.830 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 1.230 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 0.830 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 1.390 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 0.600 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 0.600 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.71 |
| Juven | Juvenile tuber | 0.15 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 6.43 | |
| Mother_Juven | Mother tuber of Juvenile | 4.58 |