Detail information of GWHGAAEX006865/evm.TU.scaffold_19.209


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|325289903|ref|YP_004266084.1|1.00E-22rhomboid family protein [Syntrophobotulus glycolicus DSM 8271]
KOGKOG22896.00E-142Rhomboid family proteins
nrgi|727694670|gb|AIY60690.1|0rhomboid protein Panut5887 [Pandanus utilis]
trEMBLtr|A0A061ERN0|A0A061ERN0_THECC2.00E-176RHOMBOID-like 1 {ECO:0000313|EMBL:EOY07506.1}
TAIRAT3G537806.00E-142RHOMBOID-like protein 4

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000002055615105566457-
Transcript Sequence

Network for GWHGAAEX006865

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module1

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01694.21Rhomboid892293.10E-38
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0004252Molecular Functionserine-type endopeptidase activity
GO:0016021Cellular Componentintegral component of membrane

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms18.920
SRR2545915Juvenile tuber31.820
SRP108465SRR5643513five period of Gastrodia elata36.190
SRR5643514five period of Gastrodia elata31.050
SRR5643515five period of Gastrodia elata28.760
SRR5643524five period of Gastrodia elata29.570
SRR5643525five period of Gastrodia elata80.540
SRR5643528five period of Gastrodia elata136.200
SRR5643658five period of Gastrodia elata161.330
SRR5643659five period of Gastrodia elata18.950
SRR5643660five period of Gastrodia elata16.540
SRR5643661five period of Gastrodia elata16.480
SRR5643662five period of Gastrodia elata13.460
SRR5643663five period of Gastrodia elata13.140
SRR5643664five period of Gastrodia elata13.580
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_124.190
SRR6049655Rhizomagastrodiae_C368-T10_good_129.370
SRR6049656Rhizomagastrodiae_C368-T07_good_128.540
SRR6049657Rhizomagastrodiae_C368-T07_good_123.800
SRR6049658Rhizomagastrodiae_C368-T04_good_118.400
SRR6049659Rhizomagastrodiae_C368-T04_good_118.460
SRR6049660Rhizomagastrodiae_C368-T01_good_119.730
SRR6049661Rhizomagastrodiae_C368-T04_good_121.050
SRR6049662Rhizomagastrodiae_C368-T01_good_126.020
SRR6049663Rhizomagastrodiae_C368-T01_good_120.730
SRR6049664Rhizomagastrodiae_C368-T10_good_135.180
SRR6049665Rhizomagastrodiae_C368-T10_good_135.180
SRP279888GastroGastrodia elata tuber 16.21
JuvenJuvenile tuber26.42
Mother_GastroMother tuber of Gastrodia elata 26.72
Mother_JuvenMother tuber of Juvenile 16.38