Detail information of GWHGAAEX006868/evm.TU.scaffold_19.214
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|430762529|ref|YP_007218386.1| | 0 | NAD-dependent malic enzyme [Thioalkalivibrio nitratireducens DSM 14787] |
| KOG | KOG1257 | 0 | NADP+-dependent malic enzyme |
| nr | gi|743756147|ref|XP_010915357.1| | 0 | PREDICTED: NADP-dependent malic enzyme isoform X1 [Elaeis guineensis] |
| Swissprot | tr|P51615|MAOX_VITVI | 0 | NADP-dependent malic enzyme |
| trEMBL | tr|U5D173|U5D173_AMBTC | 0 | Malic enzyme {ECO:0000256|RuleBase:RU003426} |
| TAIR | AT5G25880 | 0 | NADP-malic enzyme 3 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000020 | 5777197 | 5800680 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX006868
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00390.18 | malic | 102 | 283 | 4.80E-79 |
| PF03949.14 | Malic_M | 293 | 546 | 1.90E-96 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055114 | Biological Process | oxidation-reduction process |
| GO:0004471 | Molecular Function | malate dehydrogenase (decarboxylating) (NAD+) activity |
| GO:0004470 | Molecular Function | malic enzyme activity |
| GO:0051287 | Molecular Function | NAD binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 277.410 |
| SRR2545915 | Juvenile tuber | 446.850 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 208.600 |
| SRR5643514 | five period of Gastrodia elata | 225.170 | |
| SRR5643515 | five period of Gastrodia elata | 200.640 | |
| SRR5643524 | five period of Gastrodia elata | 228.390 | |
| SRR5643525 | five period of Gastrodia elata | 200.060 | |
| SRR5643528 | five period of Gastrodia elata | 156.440 | |
| SRR5643658 | five period of Gastrodia elata | 182.160 | |
| SRR5643659 | five period of Gastrodia elata | 202.940 | |
| SRR5643660 | five period of Gastrodia elata | 217.320 | |
| SRR5643661 | five period of Gastrodia elata | 203.050 | |
| SRR5643662 | five period of Gastrodia elata | 132.740 | |
| SRR5643663 | five period of Gastrodia elata | 159.020 | |
| SRR5643664 | five period of Gastrodia elata | 166.030 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 249.780 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 168.610 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 235.310 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 286.470 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 264.140 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 284.280 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 238.050 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 253.790 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 153.600 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 148.200 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 186.370 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 186.370 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 189.12 |
| Juven | Juvenile tuber | 205.61 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 44.90 | |
| Mother_Juven | Mother tuber of Juvenile | 127.12 |