Gene detail

Detail information of GWHGAAEX006872/evm.TU.scaffold_19.220

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|262193487\|ref\|YP_003264696.1\|	2.00E-28	MATE efflux family protein [Haliangium ochraceum DSM 14365]
KOG	KOG1347	7.00E-179	Uncharacterized membrane protein, predicted efflux pump
nr	gi\|672140588\|ref\|XP_008794104.1\|	0	PREDICTED: MATE efflux family protein 5-like [Phoenix dactylifera]
Swissprot	tr\|Q9SIA4\|MATE5_ARATH	3.00E-48	MATE efflux family protein 5
trEMBL	tr\|K7V9U9\|K7V9U9_MAIZE	0	MATE efflux family protein {ECO:0000256\|RuleBase:RU004914}
TAIR	AT4G29140	7.00E-179	MATE efflux family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000020	6017196	6018813	+

Transcript Sequence
>GWHTAAEX006872 GTCAAAAAATGCATAGGCTTCCCTCAGTGTCCGAAGCCTTGAAAGAGGCCACCTTGCTCTTCCGCCTCTCTGCCCCGATGGCAGCAACGGCGCTCCTCCTCCACACCCGCTCTGCTGTCTCAATGCTCTTCCTGGGGTTCCTGGGGGACCTCCCGCTCGCGGCGGGGTCGACCGCGATGGCCTACGCGAACATCACCGGGTACTCCGTCATCTCCGGCCTGTCCCTCGGCATGGAGCCGCTGTGCGCCCAGGCGTTCGGAGCCAATCGGACGGAGCTCCTCTCCCAGACGCTCTACCGCGCAGTCCTCTTCCTCCTCGTCTCCTCCGTCCCCATCTCATTTCTGTGGATGAGCGCGTCGAGGGTCCTCGTGCTCGTCGGGCAGGACCCGGAGATCGCCGCGCTGGCCCAGAGCTATGTCCTCTTCTCCCTCCCCGACCTTGTCTCCCTCTCCCTCATCCACCCCATCCGCATCTTCCTTCGCTCGCAGGGCATCACTCGCCCGCTCGCCGCGTCTGCGGCCCTCGCCGCCGCCGTCAGCGTCCCAGCGAATCTCCTCCTCGTGACGCACCTCCAGCTCGGGGTCCCCGGAGTGGCCGCCGCCTCCGCCGCCACCAACCTCGCCCTCCTCCTCTCCCTCTGTGCCTGCCTCCGCCCCGTCCCCCCCGGGCCCGGGTGGGCCGCGGGCTGGGGCCCGCTTCCCCGGTTCGCCGCGGCGAGCTGCCTCTCCGTCTGCCTCGAGTGGTGGTGGTACGAGCTCGTGATCATCCTCTGCGGGATGCTCCCTGACCCGAAGCCCGCCGTCGCGGCCGTCGGGGTCCTCATCCAGGCCACTGCCCTGCTTTACGTCTTCCCGTCGTCGCTCGGCTCAGGCGCGTCCGCGAGGGTCGGGAACGAGCTCGGCGCCAACCGCCCGGCGGGGGCGCGGTTCTCCGCAGCCGTCGCCGTGGCAGCCGCGTCGGGCATTGGAGTCGCTGCGATGGGGCTCGCCGTCGGGTCGAGGGACGCGTGGGGGAGGGCTTTCACCGGAAACGTCGACGTCCAGCGGCTGACGGCGGCGGCGCTTCCCATCGTGGGACTTTGCGAGCTGGGCAACTGCCCGCAGACAGTGGGCTGCGGAGTGCTACGGGGCACGGCCCGGCCCGCCCGGGTTGCCCGCGTGAACTTGGGCGCGTTCTACCTGGTCGGGATGCCGGTCGCCGTCGGGCTGAGCTTCGGGCTCCGGATGGGCTTTTGCGGGCTTTGGCTGGGCCTGCTGGCGGCCCAGCTCTTCTGCGCTGCCCTCATTCTGTACGGGGTGTGGAATACGGACTGGGAGGCGCAGGCGCACCTGGCGCAGCTTCGGACGGGCGCGTGCGGACAGCTGGAGAAATGCGGACAGCCGTTGGTTTCCATCATGACGGCAGTGGAGTTCGAGACCTGATGAGCCTGTTTTGGAAACATGCCTTAAGATGTTTTGTATTTCAAAGCTAGCTATTTTTTGTATTTTTTTTTTATGTTAAAATTTGATGAGAGAGGAGATATGCTTAGAAATTGTTGGATATTTCAAGAGAATTTCAAATAATTAGAAATTTTAGGAGAAATGCTATTTAGACCGGTTGATGTGGCACTTGGAAAAAT

Network for GWHGAAEX006872

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module6

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01554.17	MatE	23	181	3.20E-27
PF01554.17	MatE	237	397	2.50E-30

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0055085	Biological Process	transmembrane transport
GO:0015297	Molecular Function	antiporter activity
GO:0042910	Molecular Function	xenobiotic transporter activity
GO:0016020	Cellular Component	membrane

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	0.190
SRP064423	SRR2545915	Juvenile tuber	1.690
SRP108465	SRR5643513	five period of Gastrodia elata	1.810
	SRR5643514	five period of Gastrodia elata	0.220
	SRR5643515	five period of Gastrodia elata	0.190
	SRR5643524	five period of Gastrodia elata	0.120
	SRR5643525	five period of Gastrodia elata	0.000
	SRR5643528	five period of Gastrodia elata	0.000
	SRR5643658	five period of Gastrodia elata	0.000
	SRR5643659	five period of Gastrodia elata	0.250
	SRR5643660	five period of Gastrodia elata	0.040
	SRR5643661	five period of Gastrodia elata	0.000
	SRR5643662	five period of Gastrodia elata	0.040
	SRR5643663	five period of Gastrodia elata	0.100
	SRR5643664	five period of Gastrodia elata	0.000
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	3.490
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	2.080
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	5.130
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	3.290
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	5.960
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	3.220
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	2.080
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	9.120
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	2.830
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	0.860
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	1.550
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	1.550
SRP279888	Gastro	Gastrodia elata tuber	0.00
	Juven	Juvenile tuber	0.07
	Mother_Gastro	Mother tuber of Gastrodia elata	0.00
	Mother_Juven	Mother tuber of Juvenile	0.15