Gene detail

Detail information of GWHGAAEX006873/evm.TU.scaffold_19.221

Functional Annotation

Database	Orthologs	Annotation
nr	gi\|672143261\|ref\|XP_008795501.1\|	PREDICTED: glucan endo-1,3-beta-glucosidase 13 [Phoenix dactylifera]
Swissprot	tr\|Q9FJU9\|E1313_ARATH	Glucan endo-1,3-beta-glucosidase 13 (Precursor)
trEMBL	tr\|K3XFB4\|K3XFB4_SETIT	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Si000583m}
TAIR	AT5G56590	O-Glycosyl hydrolases family 17 protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000020	6027552	6077043	-

Transcript Sequence
>GWHTAAEX006873 CCAAAAAAAAAAAAAACAAAAATGCAAATAAAACGAAATGGTAGGCAGCTCTGTTTTGCTGAGGCGAAGAGAAAGATAAGTGTCATAAATATCTGAATATTCAGTAAGAAGAGCCAGCTGCTCAGGCTTCAATGGCTGATGTAATATTTCTTTCAGCGATTCCTCTGCTGGCCCTTTCCCTCTTCGTCGGGCTGTGTAGTGGCGGAAAGGTTGGTGTCTGCTATGGCAGAAATGCCGACGACCTTCCAACGCCAGACAAAGTTGCTCAGCTTATCCAGCTTCATTCCATCAAATATGTTAGAATCTATGACGCCAATATTCAGGTTCTCAAGGCCTTTGCGAACACTGGAGTCGAACTTATGGTAGGAATACCTAACTTGGACTTGCTGGCCATTTCCCAATACCAATCCAATGCAGATACCTGGCTAAAGAACAATATCCTCGCTTACTATCCAGCCACCATGATCACCTACATAACGGTTGGTGCCGAGATTACCGAAAGCCCTGCCAATGTCTCATCCCTTGTTATCCCTTCCATGAGTAATGTCCACACTGCTCTGAAGAAGGTTGGATTGCACAGAAGGATCAAGATTTCAAGCACTCATTCGCTCAGAGTTCTATCCCGGTCGTTTCCGCCATCTGCTGGGGCTTTTGATAGCAAGTTTGCTTCCTTTCTGAAGCCCATGCTGGAATTTCTGGTGGAGAATCAGTCCCCTTTTATGATTGATCTCTACCCTTATTATGCTTATAGAGATTCCTCTGGAAATGTTTCTCTTGACTATGCTTTGTTCAAGCCTTCGTCGGATGTCATTGATCCTAACACTGGTTTGGTATACACCAACATGTTTGATGCACAGATGGATGCTATATATTTTGCCCTCATGGCATTGAATTTTAGGACTTTGAAGGTTATGGTTACGGAATCTGGCTGGCCAAGCAAAGGCTCGGCTAAGGAAACAGCAGCAACTTCTGATAATGCCGAGATTTACAATACCAATTTGATTCGCCATGTTATTAATAATACAGGAACTCCTGCGAAGCCGGGAGAGGCGATTGATGTTTATATATTCTCACTGTTCAATGAGAACAGGAAACCAGGCTTGGAATCTGAGAGAAACTGGGGTTTGTTTTATCCTGATCAGACTAGTATATACAGCCTTGATTTAACTGGTAAGGGTAGTGTTGACGTTGTAACTGGAGAGAATATTACTAGCTTAAATGGTACATGGTGTGTTGCTGCTAGCAATGCTCCAGAACAAGACTTGAAGAATGCATTGAATTGGGCTTGTGGTCCAGGAAATGTTGATTGTTCAGCTATTCAGCCAAGCCAGCCTTGTTTTCAACCTGATTCATTGGCTTCTCATGCGTCTTATGCTTTCAATAGCTATTATCAGCAGAATGGAGCTACTGACATTGCGTGCAGTTTTGGTGGTGCAGGGGTCAAAACCTCTAAGGATCCAAGCTATGACAAATGCAATTACGCAACCTCAGGGAAAATGAGCAGCAGAAATTCTACTGTGGCACCCAGCATTCCCTCCGCCGCAGGACGCAGCACTCCATCCTTCTTTGTGGGCATTATGGCTCTGTTCACAGCCTTTATAGGCAGCTGTGAGGGACGCAGCACTCCATCCTTCTTTGGGCATGTTTGAACTGTAGTAATCATCGTTCAGAGACTGCTTGAAAATTTAGGCAGATTTTTTGTTTGGGGGAATGTTTAGGTAGATAGCACTGAGACTTTATTATTTACAAAAAAAAAAAATGCTTAGATGCTATATTTATGATTTTGATTAATGATTTTCAATTATTATCAAATTAAGATTATGTTTAGATGCATTAATTATGTAGTAATTATATTGTCTGATTTATTGTGCAGATTATGCGGTGTCATGCATAGAA

Network for GWHGAAEX006873

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module2

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00332.17	Glyco_hydro_17	27	344	2.60E-97
PF07983.12	X8	365	436	2.30E-21

Protein Sequence

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GH17

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005975	Biological Process	carbohydrate metabolic process
GO:0004553	Molecular Function	hydrolase activity, hydrolyzing O-glycosyl compounds

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	16.700
SRP064423	SRR2545915	Juvenile tuber	14.080
SRP108465	SRR5643513	five period of Gastrodia elata	15.810
	SRR5643514	five period of Gastrodia elata	14.210
	SRR5643515	five period of Gastrodia elata	16.340
	SRR5643524	five period of Gastrodia elata	14.030
	SRR5643525	five period of Gastrodia elata	2.050
	SRR5643528	five period of Gastrodia elata	2.030
	SRR5643658	five period of Gastrodia elata	2.540
	SRR5643659	five period of Gastrodia elata	6.950
	SRR5643660	five period of Gastrodia elata	6.480
	SRR5643661	five period of Gastrodia elata	6.070
	SRR5643662	five period of Gastrodia elata	9.330
	SRR5643663	five period of Gastrodia elata	5.110
	SRR5643664	five period of Gastrodia elata	5.500
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	10.010
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	15.010
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	11.750
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	8.840
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	6.500
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	3.820
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	10.350
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	11.800
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	22.140
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	11.350
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	12.030
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	12.030
SRP279888	Gastro	Gastrodia elata tuber	2.66
	Juven	Juvenile tuber	4.88
	Mother_Gastro	Mother tuber of Gastrodia elata	1.11
	Mother_Juven	Mother tuber of Juvenile	2.36