Gene detail

Detail information of GWHGAAEX006874/evm.TU.scaffold_19.223

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|186681693\|ref\|YP_001864889.1\|	1.00E-56	hypothetical protein Npun_F1222 [Nostoc punctiforme PCC 73102]
KOG	KOG0272	0	U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats)
nr	gi\|743785434\|ref\|XP_010921905.1\|	0	PREDICTED: LOW QUALITY PROTEIN: U4/U6 small nuclear ribonucleoprotein PRP4-like protein [Elaeis guineensis]
Swissprot	tr\|O22212\|PRP4L_ARATH	0	U4/U6 small nuclear ribonucleoprotein PRP4-like protein
trEMBL	tr\|A0A061E961\|A0A061E961_THECC	0	WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related {ECO:0000313\|EMBL:EOX98803.1}
TAIR	AT2G41500	0	WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000020	6181522	6184551	+

Transcript Sequence
>GWHTAAEX006874 GCCGCTCCCCCTATAGCTTAAGTCCGCTCTTCCAGTCTACCATGGAGGAGCAGCAGATCCAAAACCTATCCCTAAACCCGACTCCTTCCAATGACCAACAACAACAACCTCCTCCTCCTCCTCCGCTGTCCATTCTCCCTACCCCCCCTCCGATTGCACCTATTCCGTTGCCACGCTCCCGTGCTGTCATCTCATCTGCCGCAGCCGAATCCGATTCCGATCGTGAGGCCTCCTTACCCCCTCCCCGCACCCATGACTATGAGATTTCCGAAGAGAGTCGCCTAGCCCGCGAGCGCCATGAGAAGGCCGTTCAGGATCTCCTCAATAAGCGCCGCGCTTTCGCCATGGCCGTCCCCACTAACGATGCCGCCGTACGCTCTCGTCTCCGTCGCCTTGGAGAGCCCGTCACACTCTTCGGAGAACGAGAGATAGAGCGCCGAGATCGGCTCCGCGATATCATGCTTAGGTTAGACAACGAGGGGCACCTCGAGCGCCTTCTCAAGGCTCATGAGGAGGAGCAGCAGGCGATTTCTGTTCCTGCAGAGGATGAAGGACCTCAGGTGTACCCGTTTTATACTGAAGGGTCTCAAGAACTGTTGGATGCAAGGATGGCAATTTTAAAGTATTCTTTGACTAAGGCGCCAGCGAGATTGGATAGGGCTAGGAGAAAGAGGAATGACCCCGACGAGGACGAGGAGGCAGAGGCCCTGGAGGCTGTAAGGCAAGCTGGGGAGATGGCGCTTGAGTGCAGTGAGATTGGTGATGATCGCCCTTTAACCGGATGTTCGTTCTCGCACGACGGAACCTTTCTCGCAACATGCGCTTGGAGTGGACTTGCTAAAATATGGAGCATGCCTGGAGTATCCAAGCATGCAACCTTAAAAGGGCACACAGAGCGTGCAACCGATGTGGTGTTTTCTTCTGCGGGCAACATTGTGGCAACCGCGTCGGCGGACAGAACCGCAAAGCTGTGGAGAAGCGACGGATGTCTCCTGAAATCTCTGGACGGGCATCTAGACAGGCTCGGGCGAATTGCGTTCCACCCATCTGGAAAGTATCTCGGAACAGCTAGCTTCGACAAGACGTGGAGGCTCTGGGATGTTGAGACTGGAGCGGAACTGCTTTACCAAGAAGGTCACAGCCGAAGCGTCTATGCGGTATGCTTTCATCCTGATGGATCTCTAGCTGCATCGTGCGGCCTCGATTCGCTCGTTCGTGTCTGGGATCTGCGCACCGGAAGAAGCATCCTTGCATTGGAGGGTCATGTCAAGCCAGTTCTCGGAGTATGTTTCTCTCCTAATGGACGCCACTTAGCGAGCGGCGGAGAGGACAATGCTTGCCGCGTGTGGGATCTGAGGAAGAGGAGATGCGAGTACATAATTCCGGCACACTCAAAACTCATTTCTCAAGTCAAATACGAGCCTCAAGAAGGATATATTCTGGCCACTTGTTCTTACGATACTAAGGCAGTGGCATGGTCGGCTCAAGATTTCAAGCCTGTTAAGACTCTCTCTGGCCATGAATCTAAGGTCACCGGATTGGACATTGCAGCAGATGGACAGCACATCGCAACAGTTTCACGTGATCGCACCATTAAGATCTGGTCCAGCAGGAGCAGTTTCAAACAGAAGGCTACTACTATGGACCTGGACTGACTGATAAGCAGCAGCATTCTTGGGTGCTTAATTAAGTTTTTCATTTCTAGAAATGGCACATGGAAGCCATTTCTAGACAACACACCTGTGAGCCGAACATCTCAAATCCTCGGCTGACATTGCTTAGTAGAGCGCAGCAGTAAAATGCATTTGAGATTGTTACTACTCTTTTGTGAACAATGGTCTGCACATCTACATCACTCTAGTAAAATATTAACAGCAAAACAGTTCTTACTAGAAATATCAGATTTGCTGAGAGAAAATTCAATGAATCCAATTTCAATTGTACAAAAGAACTAATTAGATTAATGTTAAAATTTTGGTGACAAATGGAAGAATGCAGTTGTGAATAGGAGAATTTGTTTATTCTTCAACAAAAATATTACATTCAACATCCATTCATGTTTGCTACAAAACTCTTTTTTGAATATATATAATCATATCAGTCATCATATCTTTACTTAATATTTTCTCTCATGTCTAACAACTGAGTTCACCTTTTAATCACTTCTTATTTGGATCTCTTAAATAAATAAAAATTAGATCTACTTTCTTGAAAACATTGATACTTGTAGATTTCCATAAATAATTTCTGTTTGTGAATTCATGAAAGCAAATGTCTAGTAGAGCGCAGCAGTAAAATGCACTTG

Network for GWHGAAEX006874

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08799.10	PRP4	111	138	4.40E-11
PF00400.31	WD40	245	270	0.035
PF00400.31	WD40	279	311	0.0011
PF00400.31	WD40	316	353	0.00028
PF00400.31	WD40	364	395	1.50E-06
PF00400.31	WD40	403	437	9.50E-09
PF00400.31	WD40	485	522	9.80E-08

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
K12662	PRPF4, PRP4	Spliceosome	map03040

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	13.290
SRP064423	SRR2545915	Juvenile tuber	12.400
SRP108465	SRR5643513	five period of Gastrodia elata	16.740
	SRR5643514	five period of Gastrodia elata	16.200
	SRR5643515	five period of Gastrodia elata	15.550
	SRR5643524	five period of Gastrodia elata	17.020
	SRR5643525	five period of Gastrodia elata	19.340
	SRR5643528	five period of Gastrodia elata	16.510
	SRR5643658	five period of Gastrodia elata	17.910
	SRR5643659	five period of Gastrodia elata	19.750
	SRR5643660	five period of Gastrodia elata	21.950
	SRR5643661	five period of Gastrodia elata	21.880
	SRR5643662	five period of Gastrodia elata	20.450
	SRR5643663	five period of Gastrodia elata	20.020
	SRR5643664	five period of Gastrodia elata	17.620
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	22.160
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	21.370
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	21.820
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	21.570
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	23.860
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	23.500
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	23.020
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	25.920
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	25.040
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	24.600
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	17.670
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	17.670
SRP279888	Gastro	Gastrodia elata tuber	23.48
	Juven	Juvenile tuber	23.16
	Mother_Gastro	Mother tuber of Gastrodia elata	16.94
	Mother_Juven	Mother tuber of Juvenile	16.46