Gene detail

Detail information of GWHGAAEX006876/evm.TU.scaffold_19.226

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG2056	3.00E-132	Equilibrative nucleoside transporter protein
nr	gi\|672143237\|ref\|XP_008795489.1\|	8.28E-168	PREDICTED: clathrin interactor EPSIN 1-like [Phoenix dactylifera]
Swissprot	tr\|Q8VY07\|EPN1_ARATH	1.00E-136	Clathrin interactor EPSIN 1
trEMBL	tr\|M0RX51\|M0RX51_MUSAM	1.00E-153	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr1P04930_001}
TAIR	AT5G11710	3.00E-132	ENTH/VHS family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000020	6262545	6278974	-

Transcript Sequence
>GWHTAAEX006876 CAGGCCCGATTACCTTTTAGTAGCACTTTTCTCTAAATTCACAACACCAGCCATCGCTGTTGAAAAATCTCCCCCATCGACTTCAAAAGCTTATCACCGTAGAGCTGGGGTACACGGCGGCGATTTCCGTTCATCTTGAGCTTCCGGTGCTCCATCTCCTTCTACAATCTTGATAACGGAGTCGTCTGACCCCTTTTCACTTTAATTTTAACCATCCATTCACACATCGGAATTCTTTGAATTTCATCGGTTCTAAGCTGCGATCGATTGTTTCGTCTTTTTCTCATTTTGGTTTTTGTGAAAAATTCGCCTTAGGATCTCACCAGTAATGGATTTCATGAAGGTTCTGGATCAGACAGTGCGCGAAATAAAGAGAGAGGTCAATCTAAAAGTGCTCAAGGTTCCGGAGATCGAGCAAAAGGTCCTTGATGCAACTAGTGACGAACCTTGGGGTCCTCATGGATCTGCTCTGTCTGAGCTTGCACAAGCCACAAAAAAATTCACTGAATGTCAGATGATTATGAATGTACTTTGGACAAGGCTAGGTGACAAGAGCGCACACTGGCGTCATATTTATAAGGCTTTAGCTGTTATCGAGTATTTGATAGCAAATGGGTCGGAACGAGCAATTGATAGCATTCTTGAACAAAGTCATCAAATTTCTTCACTTACTAGCTTTGAATATGTTGAGCCTAATGGAAAGGATGTTGGGATCAATGTAAGAAAGAAAGTTGAAACCATTTTAGCGCTTCTTGAAGATAAGGAAAAAATACAAGCTGTCAGAAATAAAGCTGCTGCTACACGTGATAAGTATTTTGGGCTATCATCTACAGGAATAACCTACAAATCAAGTTTGGCCTCTGGCAACAACTTTGGAACATCTAGTGGTACAAGGGAGGATGAGTTTCTCAAAGATAGCTTTAAATATGATAAACATAGCCATCGAGCTGATGATGATCACTCTAAATTAAAGGAAGGTTTTTCAAAAGAGAAGGAAGGTAGCAAATTGAAGAAGGGAAAATTGCATAGTGTCAGCAACCAAAAAGTTTCAACAAAGCCCTTGGCTAAGCCTGACCTGGTATCATCAACCAACCCAAGTTCAAGGACAACGAGAAACAATGATGAGCTTGATGATTTTGATCCACGTGGTTCTTCTTCTAAACCCGATTCATCTAACATAAGCTCACCCCAATTGGACTTATTTGGAGGAAACTTAGTGGATCTTTTGGATGTGCCTTCCTCGGCGCCTGCTAGCTCAGCAGTTTTAAATGCTACTACTGGAACTATAAAAGTTGATTTGTTTGCTGATGCAGCATTTGTGTCAGCTGCACCTCCACAGGAAAATATTGATCTGTTCGCTAATCATGCTTCTTATTTTCCTGCTGCACAATCAAATGAGAACTTATTTGCGGCAGTAGATTCAGAGTTGCTGTCAGAAACCAAGTCTTCCAATCCTACAAATATTAGTTCTTCGGATCCCTTCTCAGCATCTGATTCTTTCTTTCTCTCTAAATCTAAAGTTGATGGATCGGATGACCTCTTTGGCTCTTTTACTTCTAGTGCTACACCTAAAAAGGATTCATCATACAACAGCCTCAATAATATGGATCAGATATCTGTGCCAACCAGCCAGCCCGCACCTAAAAGTGAGGCTTTTCAAGTCAAGTCTGCAATTTGGGCTGATTCTTTAAGCCGTGGATTGATCGATCTGAATATAACTGCCCCTAAGAAGACAAGTCTGGCAGATATGGGCATCTTTGGCGGACTCAATGACGAGCACCCAGTTCTGGGCAGGGCTGCGCATCCCCTTTCTCCTTCTTCTTCTTCTTCTTCAGCAGTACTGTCCAAAGAAGCAGCAGCTTGGGATTTCTTTGGTAAATCCAATTGATACTCTTATTTTCCCTGCCGTTTCTGGAGACTGCTAAGCTTATTTGTTGTGTTCAAATATAGTCTTTATTGTGTATGAATTGCGCTTTTGGTCGAGTTTTTGAGATTCTTTGTGGGAAAATATTGCAAAAGCCTGTGTTGCGTTGTGTTGCTTTAATGCAATGGTGAGTGAGAAAAGGGTCATTTCGGTTCAGACACTAGTTCGCGGGTCAGCATGAACCCGATCGGAAAGGGTTGAGATTTTGGATGTAAATCAAACATGCTGTGTATTCTGGGGTAATTTGTGGTACAGTGGGAAGAGTAGTTAGGAACATGTTGATCAATTAAAAGCTTCATGTCAGTCAAATTGATATACAATGAGCTAGATAAATAGCTTTAGAAACCATCAACGAGTGACCATGAG

Network for GWHGAAEX006876

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01417.19	ENTH	27	147	2.40E-41

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12471	EPN	Endocytosis	map04144

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	83.190
SRP064423	SRR2545915	Juvenile tuber	86.270
SRP108465	SRR5643513	five period of Gastrodia elata	52.010
	SRR5643514	five period of Gastrodia elata	43.060
	SRR5643515	five period of Gastrodia elata	46.290
	SRR5643524	five period of Gastrodia elata	44.080
	SRR5643525	five period of Gastrodia elata	50.290
	SRR5643528	five period of Gastrodia elata	54.040
	SRR5643658	five period of Gastrodia elata	52.370
	SRR5643659	five period of Gastrodia elata	53.570
	SRR5643660	five period of Gastrodia elata	57.240
	SRR5643661	five period of Gastrodia elata	49.070
	SRR5643662	five period of Gastrodia elata	54.440
	SRR5643663	five period of Gastrodia elata	57.160
	SRR5643664	five period of Gastrodia elata	56.410
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	50.090
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	53.170
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	42.890
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	55.640
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	36.290
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	36.060
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	36.120
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	38.720
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	41.490
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	33.880
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	51.490
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	51.490
SRP279888	Gastro	Gastrodia elata tuber	51.82
	Juven	Juvenile tuber	65.71
	Mother_Gastro	Mother tuber of Gastrodia elata	49.11
	Mother_Juven	Mother tuber of Juvenile	52.14