Detail information of GWHGAAEX006878/evm.TU.scaffold_19.229


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG15954.00E-70CCCH-type Zn-finger protein
nrgi|727513589|ref|XP_010433125.1|2.82E-71PREDICTED: zinc finger CCCH domain-containing protein 49-like [Camelina sativa]
Swissprottr|Q9M0G2|C3H49_ARATH1.00E-70Zinc finger CCCH domain-containing protein 49
trEMBLtr|R0H524|R0H524_9BRAS3.00E-71Uncharacterized protein {ECO:0000313|EMBL:EOA18633.1}
TAIRAT4G291904.00E-70Zinc finger C-x8-C-x5-C-x3-H type family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000002063456386346322+
Transcript Sequence

Network for GWHGAAEX006878

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyC3H

KEGG pathway

KO Enzyme pathway mapID
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Gene Ontology

GO term OntologyName
GO:0046872Molecular Functionmetal ion binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms1.800
SRR2545915Juvenile tuber1.400
SRP108465SRR5643513five period of Gastrodia elata11.810
SRR5643514five period of Gastrodia elata14.600
SRR5643515five period of Gastrodia elata5.490
SRR5643524five period of Gastrodia elata8.930
SRR5643525five period of Gastrodia elata17.290
SRR5643528five period of Gastrodia elata9.680
SRR5643658five period of Gastrodia elata11.930
SRR5643659five period of Gastrodia elata5.280
SRR5643660five period of Gastrodia elata6.060
SRR5643661five period of Gastrodia elata9.560
SRR5643662five period of Gastrodia elata6.250
SRR5643663five period of Gastrodia elata3.710
SRR5643664five period of Gastrodia elata7.010
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_118.770
SRR6049655Rhizomagastrodiae_C368-T10_good_113.800
SRR6049656Rhizomagastrodiae_C368-T07_good_127.460
SRR6049657Rhizomagastrodiae_C368-T07_good_111.260
SRR6049658Rhizomagastrodiae_C368-T04_good_126.630
SRR6049659Rhizomagastrodiae_C368-T04_good_120.900
SRR6049660Rhizomagastrodiae_C368-T01_good_19.820
SRR6049661Rhizomagastrodiae_C368-T04_good_118.380
SRR6049662Rhizomagastrodiae_C368-T01_good_119.220
SRR6049663Rhizomagastrodiae_C368-T01_good_123.700
SRR6049664Rhizomagastrodiae_C368-T10_good_136.940
SRR6049665Rhizomagastrodiae_C368-T10_good_136.940
SRP279888GastroGastrodia elata tuber 13.43
JuvenJuvenile tuber14.98
Mother_GastroMother tuber of Gastrodia elata 20.78
Mother_JuvenMother tuber of Juvenile 9.86