Gene detail

Detail information of GWHGAAEX006882/evm.TU.scaffold_19.240

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|297567132\|ref\|YP_003686104.1\|	8.00E-89	dTDP-glucose 4,6-dehydratase [Meiothermus silvanus DSM 9946]
KOG	KOG0747	0	Putative NAD+-dependent epimerases
nr	gi\|720055527\|ref\|XP_010273412.1\|	0	PREDICTED: probable rhamnose biosynthetic enzyme 1 [Nelumbo nucifera]
Swissprot	tr\|Q9SYM5\|RHM1_ARATH	0	UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose 4-keto-reductase {ECO:0000305\|PubMed:17190829}
trEMBL	tr\|F6H2K4\|F6H2K4_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB46191.1}
TAIR	AT1G78570	0	rhamnose biosynthesis 1

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000020	6902198	6916453	+

Transcript Sequence
>GWHTAAEX006882 CACGTGTGCCTGCCCTGCCTTGGACTCCGCCCGTTATATCCCTTTTTTATATCCGAACCCAATGATTCCACTCACCGTTCTCGCGATTTTTCTCTGGGCGGTGGGCGATTTTGCCTAGAGCTTGCGATCTCCATTTTAGATCTTGCGATTCTCACACGAAGGAAAGACTACAGAGCCAGATCTCCCGTTTCCTGAGGTTCTGTTTTTGCCCGGGCTTTATCTTCTTCGCCGGTGAAGGAGTTTTATTTCCACGCCTCTTAATTCTGAGAATCCCAATCAAATAGAGACAGGATTTAGCTAATGGAAGCATACAAGCCTAAAAGCATGCTCATCACCGGGGCCGCCGGCTTCATCGCGTCCCATGTCGCCAACAGGCTCATCCGCAACTACCCAGATTACAAAATTGTCGTTCTCGACAAGCTCGACTACTGCTCCAACCTGAAGAACCTCTCCCCCTCTCGATTATCCCCAAACTTCAAGTTCGTCAAGGGTGATATTGCGAGTGCCGACCTCCTCCACTACCTTCTCATCACTGAATCCATAGACACCATAATGCATTTCGCTGCTCAGACGCACGTCGACAATTCGTTCGGAAACTCCTTCGAGTTCACTAAAAACAACATATATGGAACCCATGTTCTGCTGGAGGCTTGCAAGGTCACTGGCCAGATCCGCAGATTCATCCACGTCAGCACCGACGAAGTTTACGGGGAGACTGACGAGAATGCTGTCGTCGGCAATCACGAAGCCTCTCAGCTCCTCCCCACAAATCCGTATTCCGCAACCAAAGCTGGAGCTGAAATGCTTGTCATGGCTTACGGACGGTCCTATGGTCTGCCTGTCATAACCACACGGGGCAATAATGTCTATGGCCCAAACCAGTTCCCGGAGAAGCTGATCCCAAAATTCATCCTCCTTGCCATGAGAGGTCAGCCCCTCCCGATCCACGGAGACGGCTCTAACGTGAGGAGCTACCTCTACTGTGAGGATGTTGCGGAGGCTTTTGAAGTCATTCTCCATAGAGGAGAGATTGGACACGTTTATAACATCGGGACTAGGAAAGAGCGGAGGGTGATTGATGTGGCGAAAGACATATGCAAGCTCTTCTCGCTTGATCCTGAAACGGAGATCAAGTTCGTCGACAACCGTCCGTTCAACGACCAGAGGTACTTTCTCGATGACCAGAAGCTGAAAGTGTTGGGCTGGTCAGAGAGGACCACGTGGGAGGAGGGTCTTCGAAAGACCATCGAATGGTACACGAATAATCCCCGCTGGTGGGGAGATGTCTCGGGGGCGCTCCTGCCTCACCCGAGGATGCTGATGATGCCGGGCACGGAGAGGCATTCCGATTGCCCGGAGGATATCAAGAGCGTGCTCTCATCCCCATCCCCGTCCCCGTCCCCGTCCCCACCAAACATTTTCACCAATTCGACCCAAATGGTGGTACCGGTGTCCAGGAGTGGCCCCACCATCCCCATGAAGGCTGCTGCCCCTTCTCTGAAGTTTCTAATCTATGGAAGGACTGGCTGGATTGGTGGCCTTCTCGGGAAGATTTGCGAGAAGAAAGGGATATCTTACGAGTATGGGATGGGGCGATTGGAGGAACGAGCCCAGCTCCAGTTGGACATTCACAATGCAAGGCCAACACACGTCTTCAATGCCGCCGGCGTGACTGGCAGGCCGAACGTCGACTGGTGTGAATCCCACAAGCAGGAAACCATCCGTGCGAACGTCATTGGCACCTTGACGCTGGCGGATGTTTGCTTGGAGAACGGGCTGCTGCTGTTGAACTACGCTACCGGATGCATATTCGAGTACGACGCGGATCACCCTGAAAGCTCCGGCAAGGGATACAAGGAGGAGGATCGCCCGAACTTCACCGGCTCCTTCTACTCGAAGATGAAGGCAATGGTTGAAGAGTTGCTGAAAGAGTACGACAATGTGTGCACCCTGAGGGTCCGGATGCCGATATCCTCCGATCTAGCCAACCCTCGGAACTTCATCACAAAGATCACCCGTTACGACAAGGTGGTGAACATTCCGAACAGCATGACAGTGCTGGACGAGCTCCTCCCGATCTCCATCGAGATGGCAAAGAGAAATTGCAGGGGGATATGGAACTTCACAAACCCGGGGACAGTGAGCCACAATGAGATCCTGGAGATGTACAGGGATTACGTCGATGCCGACTTCAGATGGGCCAACTTCACGCTCAAGGAGCAAGCGGCGGTGATCGTCGCGCCGCGGAGCAACAACGAGCTTGATGCTTCTAAATTGAAGGGGGAGTTTCCTGAGCTTCTGAGCATCAAGGAGTCCCTCCTGAAGTATGTGTTTGAGCCCAACAAGAAGAAGCATGCCAAATAAAGAAGAATGATTTTCTCTATATGCCCTTTTATCCTTCGGAGGATTTTCATGATTATTCCATTTAAATCTGATATTATATTTGAGATTACATTAATTTATATAAATATATTGTTTGTCTTTATGATACGGTTGCTAAAGATTTTTCTCAATTTTTTGTTGTTGTCAAAAGTATCAGATATCCAGCATAGGAATTAAAAATGCGTTCAATTTTTTAGCTGCATAAAGCCACAGTCGTTATAATTTGCCATTTAAATATTATAACATTCAAATTTATATATTTTTAGTGTTTCT

Network for GWHGAAEX006882

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF16363.4	GDP_Man_Dehyd	10	315	6.50E-70
PF04321.16	RmlD_sub_bind	401	573	3.20E-12

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12450	RHM	Metabolic pathways	map01100
K12450	RHM	Amino sugar and nucleotide sugar metabolism	map00520

Gene Ontology

GO term	Ontology	Name
GO:0009225	Biological Process	nucleotide-sugar metabolic process
GO:0008460	Molecular Function	dTDP-glucose 4,6-dehydratase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	74.710
SRP064423	SRR2545915	Juvenile tuber	93.870
SRP108465	SRR5643513	five period of Gastrodia elata	152.950
	SRR5643514	five period of Gastrodia elata	141.480
	SRR5643515	five period of Gastrodia elata	133.490
	SRR5643524	five period of Gastrodia elata	146.860
	SRR5643525	five period of Gastrodia elata	111.630
	SRR5643528	five period of Gastrodia elata	144.290
	SRR5643658	five period of Gastrodia elata	145.700
	SRR5643659	five period of Gastrodia elata	150.620
	SRR5643660	five period of Gastrodia elata	140.620
	SRR5643661	five period of Gastrodia elata	142.030
	SRR5643662	five period of Gastrodia elata	137.420
	SRR5643663	five period of Gastrodia elata	154.330
	SRR5643664	five period of Gastrodia elata	117.070
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	138.190
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	140.050
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	149.260
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	145.630
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	129.390
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	132.720
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	164.960
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	146.130
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	182.540
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	177.010
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	162.920
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	162.920
SRP279888	Gastro	Gastrodia elata tuber	98.14
	Juven	Juvenile tuber	173.27
	Mother_Gastro	Mother tuber of Gastrodia elata	131.12
	Mother_Juven	Mother tuber of Juvenile	148.92