Detail information of GWHGAAEX006883/evm.TU.scaffold_19.241
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|284030326|ref|YP_003380257.1| | 1.00E-100 | protease-associated PA domain-containing protein [Kribbella flavida DSM 17836] |
| nr | gi|743756319|ref|XP_010916207.1| | 0 | PREDICTED: subtilisin-like protease SBT5.4 isoform X1 [Elaeis guineensis] |
| Swissprot | tr|F4JXC5|SBT54_ARATH | 0 | Subtilisin-like protease SBT5.4 {ECO:0000303|PubMed:16193095} (Precursor) |
| trEMBL | tr|I1HR56|I1HR56_BRADI | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:BRADI2G48740.1} |
| TAIR | AT5G45650 | 0 | subtilase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000020 | 6922588 | 6941043 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX006883
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF05922.15 | Inhibitor_I9 | 34 | 101 | 3.60E-12 |
| PF00082.21 | Peptidase_S8 | 137 | 603 | 6.60E-47 |
| PF02225.21 | PA | 411 | 482 | 3.60E-08 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006508 | Biological Process | proteolysis |
| GO:0004252 | Molecular Function | serine-type endopeptidase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.030 |
| SRR2545915 | Juvenile tuber | 0.330 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 6.120 |
| SRR5643514 | five period of Gastrodia elata | 12.360 | |
| SRR5643515 | five period of Gastrodia elata | 6.330 | |
| SRR5643524 | five period of Gastrodia elata | 8.110 | |
| SRR5643525 | five period of Gastrodia elata | 1.360 | |
| SRR5643528 | five period of Gastrodia elata | 1.950 | |
| SRR5643658 | five period of Gastrodia elata | 2.480 | |
| SRR5643659 | five period of Gastrodia elata | 0.100 | |
| SRR5643660 | five period of Gastrodia elata | 0.220 | |
| SRR5643661 | five period of Gastrodia elata | 0.080 | |
| SRR5643662 | five period of Gastrodia elata | 0.110 | |
| SRR5643663 | five period of Gastrodia elata | 0.060 | |
| SRR5643664 | five period of Gastrodia elata | 0.080 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 7.120 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 13.030 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 11.780 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 4.270 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 7.770 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 5.780 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 10.320 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 8.680 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 28.700 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 22.360 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 16.490 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 16.490 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 5.74 |
| Juven | Juvenile tuber | 0.14 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 4.03 | |
| Mother_Juven | Mother tuber of Juvenile | 0.11 |