Detail information of GWHGAAEX006886/evm.TU.scaffold_19.246
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG2085 | 0 | Serine/threonine protein phosphatase 2A, regulatory subunit |
| nr | gi|672182673|ref|XP_008811587.1| | 0 | PREDICTED: serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' iota isoform-like [Phoenix dactylifera] |
| Swissprot | tr|Q93YV6|2A5I_ARATH | 0 | Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' iota isoform |
| trEMBL | tr|M0S674|M0S674_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr2P08330_001} |
| TAIR | AT5G25510 | 0 | Protein phosphatase 2A regulatory B subunit family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000020 | 6986206 | 6997520 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX006886
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01603.19 | B56 | 77 | 484 | 1.20E-170 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0007165 | Biological Process | signal transduction |
| GO:0019888 | Molecular Function | protein phosphatase regulator activity |
| GO:0000159 | Cellular Component | protein phosphatase type 2A complex |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 21.040 |
| SRR2545915 | Juvenile tuber | 20.030 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 22.070 |
| SRR5643514 | five period of Gastrodia elata | 25.250 | |
| SRR5643515 | five period of Gastrodia elata | 19.330 | |
| SRR5643524 | five period of Gastrodia elata | 18.560 | |
| SRR5643525 | five period of Gastrodia elata | 31.800 | |
| SRR5643528 | five period of Gastrodia elata | 24.850 | |
| SRR5643658 | five period of Gastrodia elata | 36.820 | |
| SRR5643659 | five period of Gastrodia elata | 14.340 | |
| SRR5643660 | five period of Gastrodia elata | 12.200 | |
| SRR5643661 | five period of Gastrodia elata | 12.760 | |
| SRR5643662 | five period of Gastrodia elata | 13.760 | |
| SRR5643663 | five period of Gastrodia elata | 18.460 | |
| SRR5643664 | five period of Gastrodia elata | 15.070 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 15.410 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 17.370 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 21.740 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 13.320 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 9.830 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 6.170 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 11.240 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 10.530 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 21.120 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 14.660 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 24.720 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 24.720 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 8.93 |
| Juven | Juvenile tuber | 9.08 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 7.63 | |
| Mother_Juven | Mother tuber of Juvenile | 6.83 |