Detail information of GWHGAAEX006895/evm.TU.scaffold_19.258
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG0014 | 7.00E-29 | MADS box transcription factor |
| nr | gi|672203827|ref|XP_008778747.1| | 4.98E-44 | PREDICTED: agamous-like MADS-box protein AGL80 [Phoenix dactylifera] |
| Swissprot | tr|Q9FJK3|AGL80_ARATH | 9.00E-29 | Agamous-like MADS-box protein AGL80 |
| trEMBL | tr|M0SCW7|M0SCW7_MUSAM | 3.00E-43 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr3P08500_001} |
| TAIR | AT3G05860 | 7.00E-29 | MADS-box transcription factor family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000020 | 7358118 | 7358741 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX006895
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00319.17 | SRF-TF | 11 | 51 | 1.10E-14 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | MADS-M-type |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter |
| GO:0000987 | Molecular Function | core promoter proximal region sequence-specific DNA binding |
| GO:0000981 | Molecular Function | RNA polymerase II transcription factor activity, sequence-specific DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| GO:0003677 | Molecular Function | DNA binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.000 |
| SRR2545915 | Juvenile tuber | 0.000 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 0.170 |
| SRR5643514 | five period of Gastrodia elata | 0.000 | |
| SRR5643515 | five period of Gastrodia elata | 0.160 | |
| SRR5643524 | five period of Gastrodia elata | 0.290 | |
| SRR5643525 | five period of Gastrodia elata | 0.180 | |
| SRR5643528 | five period of Gastrodia elata | 0.180 | |
| SRR5643658 | five period of Gastrodia elata | 0.000 | |
| SRR5643659 | five period of Gastrodia elata | 0.000 | |
| SRR5643660 | five period of Gastrodia elata | 0.000 | |
| SRR5643661 | five period of Gastrodia elata | 0.160 | |
| SRR5643662 | five period of Gastrodia elata | 0.310 | |
| SRR5643663 | five period of Gastrodia elata | 0.120 | |
| SRR5643664 | five period of Gastrodia elata | 0.140 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 0.340 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 0.000 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 0.140 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 0.000 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 0.640 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.000 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 0.000 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 0.690 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 0.390 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 0.640 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 0.000 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 0.000 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.17 |
| Juven | Juvenile tuber | 0.66 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 3.01 | |
| Mother_Juven | Mother tuber of Juvenile | 2.64 |