Detail information of GWHGAAEX006896/evm.TU.scaffold_19.259
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|472322539|ref|YP_007672042.1| | 3.00E-92 | sulfate permease [Polaribacter sp. MED152] |
| KOG | KOG0236 | 0 | Sulfate/bicarbonate/oxalate exchanger SAT-1 and related transporters (SLC26 family) |
| nr | gi|672190762|ref|XP_008775334.1| | 0 | PREDICTED: probable sulfate transporter 3.5 [Phoenix dactylifera] |
| Swissprot | tr|Q94LW6|SUT35_ARATH | 0 | Probable sulfate transporter 3.5 |
| trEMBL | tr|A2WUI5|A2WUI5_ORYSI | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:EAY75631.1} |
| TAIR | AT3G51895 | 0 | sulfate transporter 3;1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000020 | 7362455 | 7406926 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX006896
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00916.19 | Sulfate_transp | 75 | 455 | 1.20E-121 |
| PF01740.20 | STAS | 507 | 624 | 2.40E-29 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055085 | Biological Process | transmembrane transport |
| GO:0008272 | Biological Process | sulfate transport |
| GO:0008271 | Molecular Function | secondary active sulfate transmembrane transporter activity |
| GO:0015116 | Molecular Function | sulfate transmembrane transporter activity |
| GO:0016020 | Cellular Component | membrane |
| GO:0016021 | Cellular Component | integral component of membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 118.340 |
| SRR2545915 | Juvenile tuber | 43.400 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 57.180 |
| SRR5643514 | five period of Gastrodia elata | 65.060 | |
| SRR5643515 | five period of Gastrodia elata | 88.020 | |
| SRR5643524 | five period of Gastrodia elata | 78.150 | |
| SRR5643525 | five period of Gastrodia elata | 24.680 | |
| SRR5643528 | five period of Gastrodia elata | 56.600 | |
| SRR5643658 | five period of Gastrodia elata | 23.760 | |
| SRR5643659 | five period of Gastrodia elata | 15.870 | |
| SRR5643660 | five period of Gastrodia elata | 25.060 | |
| SRR5643661 | five period of Gastrodia elata | 18.360 | |
| SRR5643662 | five period of Gastrodia elata | 19.950 | |
| SRR5643663 | five period of Gastrodia elata | 7.870 | |
| SRR5643664 | five period of Gastrodia elata | 10.230 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 58.280 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 22.760 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 40.700 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 71.810 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 99.840 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 131.840 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 66.510 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 85.760 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 29.640 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 58.100 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 32.260 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 32.260 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 14.90 |
| Juven | Juvenile tuber | 16.97 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 214.28 | |
| Mother_Juven | Mother tuber of Juvenile | 84.76 |