Gene detail

Detail information of GWHGAAEX006897/evm.TU.scaffold_19.264

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG4282	3.00E-65	Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain
nr	gi\|672113035\|ref\|XP_008808856.1\|	8.29E-106	PREDICTED: rRNA biogenesis protein rrp36 [Phoenix dactylifera]
Swissprot	tr\|Q9LJG8\|ASIL2_ARATH	3.00E-21	Trihelix transcription factor ASIL2 {ECO:0000305}
trEMBL	tr\|M1D3Q3\|M1D3Q3_SOLTU	4.00E-86	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400080593}
TAIR	AT3G24490	3.00E-65	Alcohol dehydrogenase transcription factor Myb/SANT-like family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000020	7568471	7569908	-

Transcript Sequence
>GWHTAAEX006897 ATGGATGACACCGAGGACGATGCGGGGTATCCCCCAAATCCTTACCCCCAAAGCAATCGCCGTCCCTTTAATTACTCCGGCCCCCACGCTCGCAATACATCCTACCCATCGCATATTCTTGGCGGATATCCCGACGATTACGTTGACGACGACGAGGAGGAGGACGAGGAGGAGGAGCGTAACGAAATCGAGCTTGCCGCGAATGGCGCCGAAGGCGAAGAGGACGAAGAGGTTAGCGCTGGAAGAGGTTATACCCGGCCGCGGAATGTGAGTGGCGACGATGGCGGGGATGACGGTGGAGATTCTTCTGAGAGCTGCGAAAAGCGGAGGAGGCTCGACCGATATGCCCTAGGCTTTGAATTGGTCCCTCGCTCGGCTTCATCTTCTCTGCTGAGGCCGTCGCAGTCGCGAACTTCCTTGGCCGATTGGTCGGAGGAGTCTACGTTCGCGCTTCTCGATGCCTGGGGAGATCGTTACCTAAAGAATGGACGGAAGAGCCTTCGCTCAGATGAATGGGGTGAGGTCGCCAAGAAGGTTTTTCATGGCTCCAAGACTCCTATATCTGAATCTCAGTGCAGAAACCGCCTGGACACTTTGAAGAAGAAATATAAGAAGGAGAAGGCCAAATACCCTGAGTACTCTAGCTCAAGCAGCAAGTGGATTTATTTCCAAAAGATGGATGAGCTGATGTCGTCGACTCCCCTACCGCCGCCCACAACCAGGCAACAACCTCAAGTGGTTAGGCTTCCATGTGGAATCGATGCTGGAGAGTATGTCTTCTCAAGCTCTAAACTTTATTTGAAATGCTCTGATGGTATGGATGAGATGAGGGATAGCCCTGGTGACTCTGCCTCAGAAGGCGAGGGTGAGGATGTTGATGATGAGTCTGATGGACTTCCACCCCGGAGGGATAGGGTTGGAGGAGGTACCAAGTCTTCTTACAAGATGCTTGCTGATTCTATTCAGAAGTTTGGTGCAATTTATGAAAAGATTGAGAATAACAAGAAGCAGCAGATGATAGAGCTGGAGAGAATGAGGAAAGATTTACACAGGGATCTTGAGTTGCAGAAGAGACAGATATTAGATAGAGCACATGCTGAGATTGCTAGACTTAGACATAATGGGGATGAGGATGAAAGAATTGATGAGGATGGCAATGCTGATATTGATGATGTTGATGTTTCTGAAGAGAATATGAGCGGGTGAGGTAGGCTTGTGTATGCTTTTTTTTTTTTAATTTATTCATTGCTTTAAAAGTACTGTTTGTGTGTCCATTTCTACTTTTTGATTATTTACTTTCGAATTTTCTTTAATAAACTGATATTATTGTGTTTGGAAAACATATTCTTGAACATTTTAGTAATTATAATATGTAACATGGTTTCCAACAAATATGTAAATTACATGTTTACAACCACATGTAACAGTTTGTATGAAC

Network for GWHGAAEX006897

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13837.5	Myb_DNA-bind_4	142	229	3.90E-19

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	Trihelix

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	59.010
SRP064423	SRR2545915	Juvenile tuber	35.630
SRP108465	SRR5643513	five period of Gastrodia elata	28.570
	SRR5643514	five period of Gastrodia elata	20.660
	SRR5643515	five period of Gastrodia elata	20.560
	SRR5643524	five period of Gastrodia elata	21.290
	SRR5643525	five period of Gastrodia elata	24.460
	SRR5643528	five period of Gastrodia elata	23.320
	SRR5643658	five period of Gastrodia elata	30.910
	SRR5643659	five period of Gastrodia elata	26.560
	SRR5643660	five period of Gastrodia elata	29.700
	SRR5643661	five period of Gastrodia elata	29.720
	SRR5643662	five period of Gastrodia elata	32.150
	SRR5643663	five period of Gastrodia elata	29.520
	SRR5643664	five period of Gastrodia elata	44.100
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	42.250
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	19.700
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	34.130
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	53.020
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	50.020
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	57.860
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	48.670
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	47.820
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	27.560
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	38.050
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	27.910
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	27.910
SRP279888	Gastro	Gastrodia elata tuber	23.06
	Juven	Juvenile tuber	35.73
	Mother_Gastro	Mother tuber of Gastrodia elata	17.70
	Mother_Juven	Mother tuber of Juvenile	28.10