Detail information of GWHGAAEX006898/evm.TU.scaffold_19.267
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|182680481|ref|YP_001834627.1| | 7.00E-20 | 50S ribosomal protein L25/general stress protein Ctc [Beijerinckia indica subsp. indica ATCC 9039] |
| nr | gi|695006021|ref|XP_009389483.1| | 5.60E-121 | PREDICTED: uncharacterized protein LOC103976032 isoform X2 [Musa acuminata subsp. malaccensis] |
| trEMBL | tr|M0S677|M0S677_MUSAM | 2.00E-121 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr2P08360_001} |
| TAIR | AT4G23620 | 4.00E-101 | Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000020 | 7635192 | 7651099 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX006898
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01386.18 | Ribosomal_L25p | 62 | 164 | 8.70E-10 |
| PF14693.5 | Ribosomal_TL5_C | 173 | 254 | 1.30E-18 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K02897 | RP-L25, rplY | Ribosome | map03010 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006412 | Biological Process | translation |
| GO:0003735 | Molecular Function | structural constituent of ribosome |
| GO:0008097 | Molecular Function | 5S rRNA binding |
| GO:0005840 | Cellular Component | ribosome |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 15.650 |
| SRR2545915 | Juvenile tuber | 13.230 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 19.370 |
| SRR5643514 | five period of Gastrodia elata | 22.540 | |
| SRR5643515 | five period of Gastrodia elata | 19.190 | |
| SRR5643524 | five period of Gastrodia elata | 20.760 | |
| SRR5643525 | five period of Gastrodia elata | 24.750 | |
| SRR5643528 | five period of Gastrodia elata | 22.060 | |
| SRR5643658 | five period of Gastrodia elata | 18.640 | |
| SRR5643659 | five period of Gastrodia elata | 23.550 | |
| SRR5643660 | five period of Gastrodia elata | 24.420 | |
| SRR5643661 | five period of Gastrodia elata | 23.050 | |
| SRR5643662 | five period of Gastrodia elata | 24.580 | |
| SRR5643663 | five period of Gastrodia elata | 20.960 | |
| SRR5643664 | five period of Gastrodia elata | 20.670 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 14.470 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 24.010 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 15.620 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 12.610 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 11.680 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 11.490 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 12.530 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 10.600 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 15.150 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 14.130 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 20.380 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 20.380 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 18.44 |
| Juven | Juvenile tuber | 19.75 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 16.16 | |
| Mother_Juven | Mother tuber of Juvenile | 13.68 |