Detail information of GWHGAAEX006900/evm.TU.scaffold_19.271
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|333911536|ref|YP_004485269.1| | 9.00E-72 | Microtubule-severing ATPase [Methanotorris igneus Kol 5] |
| KOG | KOG0738 | 0 | AAA+-type ATPase |
| nr | gi|672113120|ref|XP_008809290.1| | 0 | PREDICTED: katanin p60 ATPase-containing subunit A1-like [Phoenix dactylifera] |
| Swissprot | tr|Q9SEX2|KTNA1_ARATH | 0 | Katanin p60 ATPase-containing subunit A1 {ECO:0000255|HAMAP-Rule:MF_03023} |
| trEMBL | tr|W1NMD1|W1NMD1_AMBTC | 0 | Katanin p60 ATPase-containing subunit A1 {ECO:0000256|HAMAP-Rule:MF_03023} |
| TAIR | AT1G80350 | 0 | P-loop containing nucleoside triphosphate hydrolases superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000020 | 7832295 | 7848850 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX006900
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00004.28 | AAA | 277 | 414 | 2.50E-38 |
| PF09336.9 | Vps4_C | 478 | 523 | 1.10E-09 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0051013 | Biological Process | microtubule severing |
| GO:0008017 | Molecular Function | microtubule binding |
| GO:0008568 | Molecular Function | microtubule-severing ATPase activity |
| GO:0005524 | Molecular Function | ATP binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 8.890 |
| SRR2545915 | Juvenile tuber | 6.830 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 8.660 |
| SRR5643514 | five period of Gastrodia elata | 9.480 | |
| SRR5643515 | five period of Gastrodia elata | 8.390 | |
| SRR5643524 | five period of Gastrodia elata | 7.940 | |
| SRR5643525 | five period of Gastrodia elata | 10.230 | |
| SRR5643528 | five period of Gastrodia elata | 7.070 | |
| SRR5643658 | five period of Gastrodia elata | 10.460 | |
| SRR5643659 | five period of Gastrodia elata | 8.360 | |
| SRR5643660 | five period of Gastrodia elata | 9.520 | |
| SRR5643661 | five period of Gastrodia elata | 8.420 | |
| SRR5643662 | five period of Gastrodia elata | 8.320 | |
| SRR5643663 | five period of Gastrodia elata | 8.940 | |
| SRR5643664 | five period of Gastrodia elata | 10.220 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 7.050 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 3.980 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 7.290 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 6.150 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 6.520 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 7.400 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 7.100 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 7.670 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 7.230 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 6.520 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 6.560 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 6.560 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 9.43 |
| Juven | Juvenile tuber | 11.22 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 8.02 | |
| Mother_Juven | Mother tuber of Juvenile | 6.58 |