Detail information of GWHGAAEX006901/evm.TU.scaffold_19.272
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 9.00E-131 | FOG: PPR repeat |
| nr | gi|672182693|ref|XP_008811598.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At5g11310, mitochondrial [Phoenix dactylifera] |
| Swissprot | tr|Q9LFM6|PP375_ARATH | 3.00E-131 | Pentatricopeptide repeat-containing protein At5g11310, mitochondrial (Precursor) |
| trEMBL | tr|Q5QN90|Q5QN90_ORYSJ | 1.00E-167 | cDNA clone:J033091P06, full insert sequence {ECO:0000313|EMBL:BAG95525.1} |
| TAIR | AT5G11310 | 9.00E-131 | Pentatricopeptide repeat (PPR) superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000020 | 7860943 | 7862908 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX006901
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13041.5 | PPR_2 | 194 | 242 | 5.80E-11 |
| PF13041.5 | PPR_2 | 299 | 348 | 2.90E-12 |
| PF12854.6 | PPR_1 | 366 | 397 | 1.60E-06 |
| PF01535.19 | PPR | 410 | 437 | 0.0015 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 3.480 |
| SRR2545915 | Juvenile tuber | 3.650 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 5.540 |
| SRR5643514 | five period of Gastrodia elata | 4.820 | |
| SRR5643515 | five period of Gastrodia elata | 3.370 | |
| SRR5643524 | five period of Gastrodia elata | 3.940 | |
| SRR5643525 | five period of Gastrodia elata | 6.240 | |
| SRR5643528 | five period of Gastrodia elata | 8.060 | |
| SRR5643658 | five period of Gastrodia elata | 6.860 | |
| SRR5643659 | five period of Gastrodia elata | 4.470 | |
| SRR5643660 | five period of Gastrodia elata | 6.040 | |
| SRR5643661 | five period of Gastrodia elata | 5.870 | |
| SRR5643662 | five period of Gastrodia elata | 6.710 | |
| SRR5643663 | five period of Gastrodia elata | 6.380 | |
| SRR5643664 | five period of Gastrodia elata | 3.090 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 4.340 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 7.700 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 3.190 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 3.920 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 3.670 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 3.970 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 3.160 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 3.670 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 4.540 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 3.870 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 4.540 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 4.540 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 5.81 |
| Juven | Juvenile tuber | 7.08 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 6.07 | |
| Mother_Juven | Mother tuber of Juvenile | 7.32 |