Detail information of GWHGAAEX006903/evm.TU.scaffold_19.275
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG0014 | 6.00E-27 | MADS box transcription factor |
| nr | gi|595649776|gb|AHM92093.1| | 6.38E-87 | MADS-box protein 17 [Erycina pusilla] |
| Swissprot | tr|Q8S151|MAD32_ORYSJ | 1.00E-64 | MADS-box transcription factor 32 |
| trEMBL | tr|X2F452|X2F452_9ASPA | 2.00E-87 | MADS-box protein 17 {ECO:0000313|EMBL:AHM92093.1} |
| TAIR | AT1G26310 | 6.00E-27 | K-box region and MADS-box transcription factor family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000020 | 8022217 | 8030350 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX006903
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module1 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00319.17 | SRF-TF | 10 | 57 | 3.20E-22 |
| PF01486.16 | K-box | 90 | 168 | 3.40E-09 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | MADS-MIKC |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0046983 | Molecular Function | protein dimerization activity |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0005634 | Cellular Component | nucleus |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 1.290 |
| SRR2545915 | Juvenile tuber | 0.360 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 9.450 |
| SRR5643514 | five period of Gastrodia elata | 21.020 | |
| SRR5643515 | five period of Gastrodia elata | 6.970 | |
| SRR5643524 | five period of Gastrodia elata | 13.260 | |
| SRR5643525 | five period of Gastrodia elata | 23.170 | |
| SRR5643528 | five period of Gastrodia elata | 15.220 | |
| SRR5643658 | five period of Gastrodia elata | 36.780 | |
| SRR5643659 | five period of Gastrodia elata | 0.000 | |
| SRR5643660 | five period of Gastrodia elata | 0.000 | |
| SRR5643661 | five period of Gastrodia elata | 0.320 | |
| SRR5643662 | five period of Gastrodia elata | 0.000 | |
| SRR5643663 | five period of Gastrodia elata | 0.240 | |
| SRR5643664 | five period of Gastrodia elata | 0.000 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 3.300 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 3.780 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 6.370 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 2.360 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 2.790 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 1.160 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 6.780 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 5.140 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 15.590 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 13.500 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 7.330 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 7.330 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.00 |
| Juven | Juvenile tuber | 10.17 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 2.13 | |
| Mother_Juven | Mother tuber of Juvenile | 2.70 |