Detail information of GWHGAAEX006905/evm.TU.scaffold_190.2


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|269839784|ref|YP_003324477.1|4.00E-556,7-dimethyl-8-ribityllumazine synthase [Thermobaculum terrenum ATCC BAA-798]
KOGKOG32435.00E-836,7-dimethyl-8-ribityllumazine synthase
nrgi|695066064|ref|XP_009379910.1|4.29E-96PREDICTED: 6,7-dimethyl-8-ribityllumazine synthase, chloroplastic [Musa acuminata subsp. malaccensis]
Swissprottr|O80575|RISB_ARATH1.00E-836,7-dimethyl-8-ribityllumazine synthase, chloroplastic (Precursor)
trEMBLtr|M0RIR1|M0RIR1_MUSAM2.00E-966,7-dimethyl-8-ribityllumazine synthase {ECO:0000256|RuleBase:RU003795}
TAIRAT2G440505.00E-836,7-dimethyl-8-ribityllumazine synthase / DMRL synthase / lumazine synthase / riboflavin synthase

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000186159009179579+
Transcript Sequence

Network for GWHGAAEX006905

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00885.18DMRL_synthase792174.60E-54
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00794ribH, RIB4 Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Riboflavin metabolismmap00740

Gene Ontology

GO term OntologyName
GO:0009231Biological Processriboflavin biosynthetic process
GO:0000906Molecular Function6,7-dimethyl-8-ribityllumazine synthase activity
GO:0009349Cellular Componentriboflavin synthase complex

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms62.040
SRR2545915Juvenile tuber76.440
SRP108465SRR5643513five period of Gastrodia elata53.480
SRR5643514five period of Gastrodia elata57.280
SRR5643515five period of Gastrodia elata47.310
SRR5643524five period of Gastrodia elata50.640
SRR5643525five period of Gastrodia elata35.590
SRR5643528five period of Gastrodia elata40.180
SRR5643658five period of Gastrodia elata36.970
SRR5643659five period of Gastrodia elata47.720
SRR5643660five period of Gastrodia elata43.660
SRR5643661five period of Gastrodia elata45.850
SRR5643662five period of Gastrodia elata39.020
SRR5643663five period of Gastrodia elata46.450
SRR5643664five period of Gastrodia elata39.050
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_151.740
SRR6049655Rhizomagastrodiae_C368-T10_good_166.110
SRR6049656Rhizomagastrodiae_C368-T07_good_156.670
SRR6049657Rhizomagastrodiae_C368-T07_good_152.630
SRR6049658Rhizomagastrodiae_C368-T04_good_147.080
SRR6049659Rhizomagastrodiae_C368-T04_good_150.000
SRR6049660Rhizomagastrodiae_C368-T01_good_154.710
SRR6049661Rhizomagastrodiae_C368-T04_good_150.350
SRR6049662Rhizomagastrodiae_C368-T01_good_154.050
SRR6049663Rhizomagastrodiae_C368-T01_good_155.840
SRR6049664Rhizomagastrodiae_C368-T10_good_168.650
SRR6049665Rhizomagastrodiae_C368-T10_good_168.650
SRP279888GastroGastrodia elata tuber 33.30
JuvenJuvenile tuber38.81
Mother_GastroMother tuber of Gastrodia elata 16.49
Mother_JuvenMother tuber of Juvenile 21.62