Detail information of GWHGAAEX006908/evm.TU.scaffold_190.7
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|226229240|ref|YP_002763346.1| | 2.00E-24 | putative serine/threonine protein kinase [Gemmatimonas aurantiaca T-27] |
| nr | gi|743887032|ref|XP_010910292.1| | 0 | PREDICTED: L-type lectin-domain containing receptor kinase IX.1-like [Elaeis guineensis] |
| Swissprot | tr|Q9LXA5|LRK91_ARATH | 0 | L-type lectin-domain containing receptor kinase IX.1 (Precursor) |
| trEMBL | tr|V7CHQ9|V7CHQ9_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW28446.1} |
| TAIR | AT5G10530 | 0 | Concanavalin A-like lectin protein kinase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000186 | 448673 | 451835 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX006908
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00139.18 | Lectin_legB | 24 | 259 | 1.40E-69 |
| PF00069.24 | Pkinase | 344 | 608 | 4.70E-48 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | RLK-Pelle_L-LEC |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006468 | Biological Process | protein phosphorylation |
| GO:0004672 | Molecular Function | protein kinase activity |
| GO:0005524 | Molecular Function | ATP binding |
| GO:0030246 | Molecular Function | carbohydrate binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 1.800 |
| SRR2545915 | Juvenile tuber | 0.850 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 13.310 |
| SRR5643514 | five period of Gastrodia elata | 20.400 | |
| SRR5643515 | five period of Gastrodia elata | 16.100 | |
| SRR5643524 | five period of Gastrodia elata | 18.020 | |
| SRR5643525 | five period of Gastrodia elata | 0.520 | |
| SRR5643528 | five period of Gastrodia elata | 0.550 | |
| SRR5643658 | five period of Gastrodia elata | 0.350 | |
| SRR5643659 | five period of Gastrodia elata | 3.380 | |
| SRR5643660 | five period of Gastrodia elata | 2.910 | |
| SRR5643661 | five period of Gastrodia elata | 5.530 | |
| SRR5643662 | five period of Gastrodia elata | 9.820 | |
| SRR5643663 | five period of Gastrodia elata | 2.100 | |
| SRR5643664 | five period of Gastrodia elata | 8.350 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 29.430 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 42.490 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 24.550 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 13.140 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 19.690 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 17.640 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 12.700 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 12.680 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 22.590 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 19.050 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 50.500 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 50.500 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 1.86 |
| Juven | Juvenile tuber | 0.91 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 15.55 | |
| Mother_Juven | Mother tuber of Juvenile | 13.61 |