Detail information of GWHGAAEX006910/evm.TU.scaffold_190.10
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|310824068|ref|YP_003956426.1| | 1.00E-08 | Ser/Thr kinase [Stigmatella aurantiaca DW4/3-1] |
| KOG | KOG1166 | 4.00E-50 | Mitotic checkpoint serine/threonine protein kinase |
| nr | gi|672132464|ref|XP_008789815.1| | 0 | PREDICTED: mitotic checkpoint serine/threonine-protein kinase BUB1 [Phoenix dactylifera] |
| Swissprot | tr|F4IVI0|BUB1_ARATH | 0 | Mitotic checkpoint serine/threonine-protein kinase BUB1 |
| trEMBL | tr|E0CTG3|E0CTG3_VITVI | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:CBI21878.3} |
| TAIR | YGR188C | 4.00E-50 | Unannotated protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000186 | 686872 | 740921 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX006910
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF08311.11 | Mad3_BUB1_I | 36 | 146 | 1.90E-23 |
| PF00069.24 | Pkinase | 318 | 471 | 7.00E-14 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | BUB |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K02178 | BUB1 | Cell cycle | map04110 |
| Cell cycle - yeast | map04111 | ||
| Meiosis - yeast | map04113 | ||
| Oocyte meiosis | map04114 | ||
| Progesterone-mediated oocyte maturation | map04914 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006468 | Biological Process | protein phosphorylation |
| GO:0005524 | Molecular Function | ATP binding |
| GO:0004672 | Molecular Function | protein kinase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.920 |
| SRR2545915 | Juvenile tuber | 1.040 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 0.600 |
| SRR5643514 | five period of Gastrodia elata | 2.130 | |
| SRR5643515 | five period of Gastrodia elata | 1.090 | |
| SRR5643524 | five period of Gastrodia elata | 1.470 | |
| SRR5643525 | five period of Gastrodia elata | 1.000 | |
| SRR5643528 | five period of Gastrodia elata | 1.350 | |
| SRR5643658 | five period of Gastrodia elata | 1.700 | |
| SRR5643659 | five period of Gastrodia elata | 0.210 | |
| SRR5643660 | five period of Gastrodia elata | 0.190 | |
| SRR5643661 | five period of Gastrodia elata | 0.390 | |
| SRR5643662 | five period of Gastrodia elata | 0.500 | |
| SRR5643663 | five period of Gastrodia elata | 0.590 | |
| SRR5643664 | five period of Gastrodia elata | 0.320 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 0.850 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 1.950 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 1.060 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 1.360 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 0.750 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.340 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 0.720 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 1.460 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 2.390 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 1.220 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 2.160 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 2.160 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.17 |
| Juven | Juvenile tuber | 0.66 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.29 | |
| Mother_Juven | Mother tuber of Juvenile | 0.36 |