Detail information of GWHGAAEX006913/evm.TU.scaffold_190.16


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG30682.00E-143mRNA splicing factor
nrgi|743817595|ref|XP_010930982.1|3.86E-169PREDICTED: pre-mRNA-splicing factor ISY1 homolog [Elaeis guineensis]
trEMBLtr|A0A067D5R4|A0A067D5R4_CITSI7.00E-156Uncharacterized protein {ECO:0000313|EMBL:KDO36870.1}
TAIRAT3G187902.00E-143Unannotated protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000186945838946746-
Transcript Sequence

Network for GWHGAAEX006913

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF06246.11Isy112815.20E-90
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12870ISY1 Spliceosome map03040

Gene Ontology

GO term OntologyName
GO:0000350Biological Processgeneration of catalytic spliceosome for second transesterification step

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms34.000
SRR2545915Juvenile tuber44.000
SRP108465SRR5643513five period of Gastrodia elata33.660
SRR5643514five period of Gastrodia elata24.180
SRR5643515five period of Gastrodia elata33.720
SRR5643524five period of Gastrodia elata25.730
SRR5643525five period of Gastrodia elata30.500
SRR5643528five period of Gastrodia elata24.870
SRR5643658five period of Gastrodia elata37.480
SRR5643659five period of Gastrodia elata41.370
SRR5643660five period of Gastrodia elata38.500
SRR5643661five period of Gastrodia elata34.410
SRR5643662five period of Gastrodia elata46.680
SRR5643663five period of Gastrodia elata41.950
SRR5643664five period of Gastrodia elata45.450
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_137.770
SRR6049655Rhizomagastrodiae_C368-T10_good_131.880
SRR6049656Rhizomagastrodiae_C368-T07_good_135.240
SRR6049657Rhizomagastrodiae_C368-T07_good_139.120
SRR6049658Rhizomagastrodiae_C368-T04_good_133.840
SRR6049659Rhizomagastrodiae_C368-T04_good_131.320
SRR6049660Rhizomagastrodiae_C368-T01_good_136.840
SRR6049661Rhizomagastrodiae_C368-T04_good_137.760
SRR6049662Rhizomagastrodiae_C368-T01_good_130.260
SRR6049663Rhizomagastrodiae_C368-T01_good_136.830
SRR6049664Rhizomagastrodiae_C368-T10_good_133.440
SRR6049665Rhizomagastrodiae_C368-T10_good_133.440
SRP279888GastroGastrodia elata tuber 55.45
JuvenJuvenile tuber62.00
Mother_GastroMother tuber of Gastrodia elata 38.94
Mother_JuvenMother tuber of Juvenile 35.78