Detail information of GWHGAAEX006919/evm.TU.scaffold_190.24
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 0 | FOG: PPR repeat |
| nr | gi|672136222|ref|XP_008791801.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At5g16860 [Phoenix dactylifera] |
| Swissprot | tr|Q9LFL5|PP390_ARATH | 0 | Pentatricopeptide repeat-containing protein At5g16860 |
| trEMBL | tr|K3XED5|K3XED5_SETIT | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:Si000252m} |
| TAIR | AT5G16860 | 0 | Tetratricopeptide repeat (TPR)-like superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000186 | 1167779 | 1170771 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX006919
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module3 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 153 | 181 | 0.013 |
| PF01535.19 | PPR | 186 | 211 | 0.0014 |
| PF01535.19 | PPR | 256 | 278 | 0.0025 |
| PF13041.5 | PPR_2 | 283 | 326 | 1.10E-12 |
| PF13041.5 | PPR_2 | 433 | 482 | 2.60E-09 |
| PF13041.5 | PPR_2 | 534 | 582 | 1.30E-08 |
| PF01535.19 | PPR | 610 | 633 | 0.96 |
| PF14432.5 | DYW_deaminase | 708 | 832 | 1.00E-46 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
| GO:0008270 | Molecular Function | zinc ion binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 5.060 |
| SRR2545915 | Juvenile tuber | 3.820 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 1.820 |
| SRR5643514 | five period of Gastrodia elata | 1.540 | |
| SRR5643515 | five period of Gastrodia elata | 1.270 | |
| SRR5643524 | five period of Gastrodia elata | 1.600 | |
| SRR5643525 | five period of Gastrodia elata | 0.580 | |
| SRR5643528 | five period of Gastrodia elata | 0.280 | |
| SRR5643658 | five period of Gastrodia elata | 0.380 | |
| SRR5643659 | five period of Gastrodia elata | 2.110 | |
| SRR5643660 | five period of Gastrodia elata | 2.270 | |
| SRR5643661 | five period of Gastrodia elata | 2.570 | |
| SRR5643662 | five period of Gastrodia elata | 3.360 | |
| SRR5643663 | five period of Gastrodia elata | 2.590 | |
| SRR5643664 | five period of Gastrodia elata | 5.470 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 2.710 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 3.200 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 2.130 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 1.590 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 1.780 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 1.590 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 2.170 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 1.750 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 2.280 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 2.460 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 2.770 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 2.770 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 5.93 |
| Juven | Juvenile tuber | 1.63 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.62 | |
| Mother_Juven | Mother tuber of Juvenile | 0.35 |