Detail information of GWHGAAEX006921/evm.TU.scaffold_190.27
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|116747862|ref|YP_844549.1| | 2.00E-31 | 3'-5' exonuclease [Syntrophobacter fumaroxidans MPOB] |
| KOG | KOG2206 | 4.00E-92 | Exosome 3'-5' exoribonuclease complex, subunit PM/SCL-100 (Rrp6) |
| nr | gi|672176724|ref|XP_008808435.1| | 0 | PREDICTED: uncharacterized protein LOC103720495 isoform X1 [Phoenix dactylifera] |
| trEMBL | tr|K3ZQF3|K3ZQF3_SETIT | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:Si028833m} |
| TAIR | AT2G32420 | 4.00E-92 | Unannotated protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000186 | 1301212 | 1392513 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX006921
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01612.19 | DNA_pol_A_exo1 | 118 | 283 | 1.70E-45 |
| PF00570.22 | HRDC | 356 | 397 | 7.10E-05 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0044237 | Biological Process | cellular metabolic process |
| GO:0006139 | Biological Process | nucleobase-containing compound metabolic process |
| GO:0008408 | Molecular Function | 3'-5' exonuclease activity |
| GO:0003824 | Molecular Function | catalytic activity |
| GO:0000166 | Molecular Function | nucleotide binding |
| GO:0003676 | Molecular Function | nucleic acid binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 12.380 |
| SRR2545915 | Juvenile tuber | 16.780 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 11.500 |
| SRR5643514 | five period of Gastrodia elata | 12.810 | |
| SRR5643515 | five period of Gastrodia elata | 10.370 | |
| SRR5643524 | five period of Gastrodia elata | 12.950 | |
| SRR5643525 | five period of Gastrodia elata | 14.550 | |
| SRR5643528 | five period of Gastrodia elata | 12.380 | |
| SRR5643658 | five period of Gastrodia elata | 16.960 | |
| SRR5643659 | five period of Gastrodia elata | 11.320 | |
| SRR5643660 | five period of Gastrodia elata | 9.100 | |
| SRR5643661 | five period of Gastrodia elata | 9.540 | |
| SRR5643662 | five period of Gastrodia elata | 10.060 | |
| SRR5643663 | five period of Gastrodia elata | 11.680 | |
| SRR5643664 | five period of Gastrodia elata | 10.660 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 11.520 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 10.840 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 11.080 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 11.660 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 8.790 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 10.860 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 10.860 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 10.170 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 7.570 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 8.570 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 10.230 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 10.230 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 10.36 |
| Juven | Juvenile tuber | 28.78 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 8.56 | |
| Mother_Juven | Mother tuber of Juvenile | 15.13 |