Gene detail

Detail information of GWHGAAEX006927/evm.TU.scaffold_191.2

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|262199628\|ref\|YP_003270837.1\|	2.00E-82	aspartate kinase [Haliangium ochraceum DSM 14365]
KOG	KOG0456	0	Aspartate kinase
nr	gi\|672114426\|ref\|XP_008776937.1\|	0	PREDICTED: aspartokinase 2, chloroplastic-like isoform X1 [Phoenix dactylifera]
Swissprot	tr\|Q9LYU8\|AK1_ARATH	0	Aspartokinase 1, chloroplastic (Precursor)
trEMBL	tr\|M5XBS2\|M5XBS2_PRUPE	0	Aspartokinase {ECO:0000256\|RuleBase:RU003448}
TAIR	AT5G13280	0	aspartate kinase 1

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000194	13977	86808	+

Transcript Sequence
>GWHTAAEX006927 GCGGGAGTATCTTGCTACTGGAGTTCCTTGTTGAACTCCCGGCATCAGGTGGAAGCGGGGAAGCATTACAAATGGAACCATTCTTGCTGTTTCTTTTTCTATGTCGTCATTGTCAGTTTCATGGTGCTAATCTTGATTTTTTGAACATCTTTTCCGTGATTATATTCGCTTCCACGAGGGTGCTTGTTTTTAACGTGAGTTCGTTCGTTTCACGTTTTTTTGTCCGTAGTCATTGCTATAGTTAGCCGATCAATCGGTTAAATGGGGTTTGAATCATGTGCGAGTTGTTAGGAGTTCGCCTCAACTTCACATTTGCAGATCTTCGCAAGCACGCGACTATTAAAATGTTTACATTCTTCTATTGCGATTATTATACATTTGAATCCGCGGAAATGCGGAACCCGCGTTTTTAATTATGGCGATCTCCATTCAGCTCGGGATTCAAATTCAGGTCACAGAATTTAGAGGGAGTTTGCAGGGTTCGCTTGGCTTGTTATCAAACACGCAAAGTGCGTTAGGGTTTGAATCATTTGGTAGGATCTCTTCAAAGAGAAGAGTTTTTCCTTGCTTAAGGGGAAGTAATTTGACAATTTGCTGCCAGAGAGGTGCTACTTCCCCAGCAGTCGAAAAAGATGACTTGGAGAGACAAATTTCGGATTTAAGTTCCAAACAACTGAGCATTGTCATGAAATTTGGCGGTTCTTCTGTAGCAACTGCGGAGAGGATGAGGGCGGTTGCAAGTCTCATTCTGAGCTTTCCAAATGAGACGCCAGTGATTGTTCTCTCTGCAATGGGGAAAACAACCAACCAACTTTTGCTGGCAGGGGAGAAGGCAGTGATCTGTGGTGTATCTAATGTATCTGGAATTGATGAGCTGAGGTTTATTAAAGAATTACATCTAAAGACTGTGAATGAATTAGGAATAGATCGGGCAGTCATATTAGGTCTATTAGAAGAATTAGAGCAACTTTTGGGAGGCATTGCCGTGTTGAAAGAAATGACAATTCGTACAAGAGATTATTTGATGTCATTTGGAGAGTGCATGTCCACCAAAATTTTCTCAAAATATCTAAACAAATTAGGTATCAAGGCACGACAGTATGACGCATATGATATTGGTTTTATAACGACAGACAGATTCTCAAATGCAGACATCATTGAAGAAACATATCCTATTGTTGCAAAGAGATTGTCTGAAGATTGGTTTTGTAATCGTGAAATTCCTATTATCACTGGTTTTCTTGGAAAGGGCTGCAAATTCTCTGCAGTGACTACGTTAGGAAGGGGAGGTAGTGACCTGACGGCCACTAGTATTGGTAAAGCGCTTGGCTTGAGAGAAATTCAGATTTGGAAAAATGTTGATGGTATTTTGACATGTGATCCAAAAATTCATACTCAAGCAGCACTCGTTCCGTATTTGACATATGAAGAGGCTGCTGAACTTGCATATTTTGGAGCTCAGGTTCTAAATCCCAAATCTATGGACCCTGCTAGTGAAAGCAATATACCTGTCAGAGTCAAGAATTCATACAACCCAGACGCGCCTGGTACCCTCATCACCAAACAAAGAGATATGAGTAAGGCTGTTTTAACAAGCATTGTTTTGAAGTCGAGTATTACTTTGCTGGATATTGCAAGCAGTCGAATGGTTGGCCAATGTGGTTTCTTGGCAACGGTGTTCTCTATATTTGATGAGTGGGGAATATCTATTGATTGCTTGGCTACCAGTGAAGACAGCATTACTTTGGCATTAGATTCTTCTAAACTGTGGAGCAGAAAATTAATTCAACAGGAACTTGATCATGTAGTTGAAGAGCTTGAAAAGATTGCTGTTGTTCGTCTTCTTCAGAACAGGTCTATTATCTCCCTTATTGGCAATGCGCAGCGTTCATCATTGGTTTTGGAAAAGGCATTCCATGTTCTCAGAAAAAATGGAGTCAACGTTCAGATGCTTTCTCAGGGTGCATTTAAGGCAAACATATCCATTGTGGTTCATGATAACGAAGCCAAAGAATGTATAACAGCCCTCCATTCCGCCTTCTTTGAAAACACCAACAAATCCAGTTTAGAATGTTCCGGCCATGGCGGTTCCTACGAGCCCGTTCCAGCAACAAATTAATCTCATTTGGGTTGATCGTAATAAAAACTTTCGTGAAATCTAGCACTGTTCAGGTAATGTGCTTTATGGCTGCATAGCGTGCTTATTCTAACTTAATGCCATTAGACGATCAATTTCTGAAGAAAATGGATGCTTTCTCTTCTTTACCAACATAAGTAAATGCTACATAGCATTGTTCTTCTTATTCTTATGATTTAAATACTGAATAGGCTTCTCAAATATGAAACCAGTTTGACCATAGGGTCGATGGATTACAAAACGTATTTTCATCTTATGAAACACAGCTCGTGTTCAATTGATTGGAGAATCAAAGTCTGGCTCAAATCTTAAGACCATTTTAGAAACGTCATTGGAAAATTTTCTATGTTGATAAAGGTTTTGGAGAGGCCTTGTATAATCATAACCATTTAATAAGTTGATGAACCATGCTTGTCGTTGGGCAAACGACAAAGAAATTGTTGCAAGGATTTGGAGAAATTGTTCTATTTTATGTTATAATAAATGGTAAAGACCAATTGTTGATTCATTTATTTTTGGGAATGTTGATTTTATTTTAAATATTTTTATGTTAAATTGAATGGAAGTTATTCTCTTTATTAATATGGTTATGGATGAATGATATAATTTGTATGCTATTTACTTAACCGTCTAATATATCCTGCGGGAAGGGTACCTAATATTGGATTAGTTATTACTAACCCAACATTGGGTCATCA

Network for GWHGAAEX006927

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module8

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00696.27	AA_kinase	89	370	1.10E-42

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00928	lysC	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Biosynthesis of antibiotics	map01130
		2-Oxocarboxylic acid metabolism	map01210
		Biosynthesis of amino acids	map01230
		Pyrimidine metabolism	map00240
		Cysteine and methionine metabolism	map00270
		Lysine biosynthesis	map00300
		Monobactam biosynthesis	map00261

Gene Ontology

GO term	Ontology	Name
GO:0008652	Biological Process	cellular amino acid biosynthetic process
GO:0004072	Molecular Function	aspartate kinase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	5.460
SRP064423	SRR2545915	Juvenile tuber	12.020
SRP108465	SRR5643513	five period of Gastrodia elata	2.390
	SRR5643514	five period of Gastrodia elata	3.300
	SRR5643515	five period of Gastrodia elata	3.800
	SRR5643524	five period of Gastrodia elata	4.410
	SRR5643525	five period of Gastrodia elata	3.210
	SRR5643528	five period of Gastrodia elata	2.350
	SRR5643658	five period of Gastrodia elata	2.360
	SRR5643659	five period of Gastrodia elata	1.540
	SRR5643660	five period of Gastrodia elata	1.340
	SRR5643661	five period of Gastrodia elata	1.510
	SRR5643662	five period of Gastrodia elata	1.360
	SRR5643663	five period of Gastrodia elata	1.110
	SRR5643664	five period of Gastrodia elata	0.750
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	2.480
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	3.030
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	3.460
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	2.760
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	2.070
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	1.740
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	1.720
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	3.650
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	3.320
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	2.190
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	2.450
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	2.450
SRP279888	Gastro	Gastrodia elata tuber	0.95
	Juven	Juvenile tuber	2.51
	Mother_Gastro	Mother tuber of Gastrodia elata	2.16
	Mother_Juven	Mother tuber of Juvenile	3.41