Gene detail

Detail information of GWHGAAEX006931/evm.TU.scaffold_191.8

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|257068339\|ref\|YP_003154594.1\|	4.00E-32	fatty acid desaturase [Brachybacterium faecium DSM 4810]
KOG	KOG4232	0	Delta 6-fatty acid desaturase/delta-8 sphingolipid desaturase
nr	gi\|743756498\|ref\|XP_010917106.1\|	0	PREDICTED: delta(8)-fatty-acid desaturase 1-like [Elaeis guineensis]
Swissprot	tr\|Q43469\|SLD1_HELAN	0	Delta(8)-fatty-acid desaturase
trEMBL	tr\|A0A061GJ49\|A0A061GJ49_THECC	0	Fatty acid/sphingolipid desaturase {ECO:0000313\|EMBL:EOY29910.1}
TAIR	AT2G46210	0	Fatty acid/sphingolipid desaturase

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000194	146308	148111	+

Transcript Sequence
>GWHTAAEX006931 ATCATTTAATTTAATTTTTTACAGCACTAAAAATAAAAATCCTATCCCACCATCGCCGCTGTTAATTAGGTCTCCGACGCAGCTCCTCCTCTTCTCACACGACGGGAGAAAAACGGAAGGAAAGCCGGAGCTGATCGTTATCTTTTATTCTGCCTATAAACGTTATAATCCTGATTCTCTCTATGAATCTGCTCCGCTCGGTTGAAGGCGAAGCGGGCGGCATTACCTCCAGCGTAATGGCGGAGACAATGGAACCGAGGAGGTATATTTCGTCGGAGGAACTCGGGAAGCACAACACTTTAACTGATCTGTGGATCTCTATTCAGGGGAAGGTTTACAACGTTACAGATTGGGTAAAGGACCATCCCGGAGGCGACATCCCTCTTCTCGATCTGGCCGGACAGGACGCAACCGACGCCTTTGTCGCATTCCATCCGGCTTCTGCTTGGAAGAATCTTGATCGCTTCTGGCTCGGGTATTATCTGCAAGACTACTGCGTCTCCGAGGTTTCCAGGGACTATCGCCGCCTTGTTGCAGAGTTTACTAAGCTGGGTCTTTACGAAGAAAAGGGCCATGGAACCCTTGCCACGCTATCTCTCGTGGTTGCCCTATTCTCCATTGCGGTTTACATGGTCATTCGTACCAACAGCGCCTTGGCGCATCTCGCTGCAGGCGGAATGATTGGTCTGCTGTGGATCCAATCTGGGTGGATCGGCCACGATTCTGGTCACTACAATGTCATGATCAGCCCCTGCTTCAATCGATTTGTTCAGATTGTGTCTGGAAATTGCCTCACTGGGTTAAGCATCGGATGGTGGAAAAGAAACCATAATGCTCATCACATAGCCTGTAATAGCCTTGATTTCGATCCTGATCTCCAGCATATGCCTCTATTCGCAGTCTCATCGAAGTTATTCAATTCGCTCACCTCCTACTTCTACGAGAGAACCATGGCCTTCGATTCGGTCTCGAAGTTTCTGATCGGTTACCAGCACTTAACCTTCTATCCAGTGATGTGTTTCGCACGAGTAAATCTCTTTGCCCAGTCCTTAATTCTCCTTTTATCCAAGAAGAAGGTGCCTGCACGTTGGCAGGAGATTGCTGGTGTGATTGTGTTCTGGATCTGGTATCCTTACTTTGTTTCTTTCCTTCCAAATTGGAGAGAAAGATTGCTATTTGTTGTTGCTAGCTTTGTCATAACTGGGATTCAGCATGTGCAGTTCTGTCTCAACCATTTCTCTTCGAGTGTTTATGTTGGAAATCCAAAGGGGAATGATTGGTTCGAGAAACAGACAATGGGGACTCTTAACATCACTTGTTCTTGGTGGATGGACTGGTTTCATGGAGGATTGCAGTTCCAGGTGGAGCACCATTTATTTCCTCGGCTTCCAAGATGCCATCTTCGGAATATTTCTCCAGTTGTGAGGGAGCTCTGCAAGAAGCACAAGCTTCAGTACTCCACCGTTGGTTTCTGGGAAGCAAATGTGAAGACTATAGGAACTCTTAGAGCTGCTGCGTTGCAAGCCCGCAGCTTGGAAGGCATAGCTCCAAAGAATTTGGTCTGGGAGGCGCTCAATAACTTTGGCTGAGGTTTTCTCCTTGCCCTCTTTTTTGAAGGTGATGGTTCTTTCTGTATTTCATGTATGTTTGCTTGATTTTGAGTAAGTTTTGGTAAGGAGAATGATCTTTGTTCCATAAAGAACTGATGATTGTGGTTTATATCTTCATCTTCAATTGGTTTGTTGCAGCTTGTTTTCCTTCGGAATAATTTAATAAGTCTAGTGACTGGATTTGTTTCAGCTGC

Network for GWHGAAEX006931

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00173.27	Cyt-b5	31	100	4.20E-20
PF00487.23	FA_desaturase	165	427	2.50E-34

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006629	Biological Process	lipid metabolic process
GO:0016491	Molecular Function	oxidoreductase activity
GO:0016021	Cellular Component	integral component of membrane

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	29.250
SRP064423	SRR2545915	Juvenile tuber	47.300
SRP108465	SRR5643513	five period of Gastrodia elata	64.060
	SRR5643514	five period of Gastrodia elata	61.600
	SRR5643515	five period of Gastrodia elata	53.410
	SRR5643524	five period of Gastrodia elata	54.650
	SRR5643525	five period of Gastrodia elata	28.690
	SRR5643528	five period of Gastrodia elata	34.520
	SRR5643658	five period of Gastrodia elata	33.350
	SRR5643659	five period of Gastrodia elata	48.010
	SRR5643660	five period of Gastrodia elata	46.200
	SRR5643661	five period of Gastrodia elata	52.580
	SRR5643662	five period of Gastrodia elata	50.970
	SRR5643663	five period of Gastrodia elata	59.130
	SRR5643664	five period of Gastrodia elata	49.780
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	71.740
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	68.100
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	71.130
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	55.310
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	38.660
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	37.050
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	46.220
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	50.550
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	75.530
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	53.880
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	93.690
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	93.690
SRP279888	Gastro	Gastrodia elata tuber	41.00
	Juven	Juvenile tuber	60.79
	Mother_Gastro	Mother tuber of Gastrodia elata	23.20
	Mother_Juven	Mother tuber of Juvenile	27.35