Detail information of GWHGAAEX006934/evm.TU.scaffold_191.13
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|557693881|ref|YP_008796935.1| | 3.00E-16 | small subunit ribosomal protein S15 [Candidatus Caldiarchaeum subterraneum] |
| KOG | KOG0400 | 3.00E-38 | 40S ribosomal protein S13 |
| nr | gi|255537075|ref|XP_002509604.1| | 1.46E-40 | 40S ribosomal protein S13, putative [Ricinus communis] |
| Swissprot | tr|P62302|RS13_SOYBN | 6.00E-42 | 40S ribosomal protein S13 |
| trEMBL | tr|B9RBS0|B9RBS0_RICCO | 5.00E-41 | 40S ribosomal protein S13, putative {ECO:0000313|EMBL:EEF50991.1} |
| TAIR | AT4G00100 | 3.00E-38 | ribosomal protein S13A |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000194 | 332995 | 333593 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX006934
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module6 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF08069.11 | Ribosomal_S13_N | 99 | 153 | 1.50E-27 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K02953 | RP-S13e, RPS13 | Ribosome | map03010 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006412 | Biological Process | translation |
| GO:0003735 | Molecular Function | structural constituent of ribosome |
| GO:0005840 | Cellular Component | ribosome |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 19.700 |
| SRR2545915 | Juvenile tuber | 27.890 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 0.230 |
| SRR5643514 | five period of Gastrodia elata | 0.350 | |
| SRR5643515 | five period of Gastrodia elata | 0.640 | |
| SRR5643524 | five period of Gastrodia elata | 0.190 | |
| SRR5643525 | five period of Gastrodia elata | 0.750 | |
| SRR5643528 | five period of Gastrodia elata | 1.170 | |
| SRR5643658 | five period of Gastrodia elata | 0.530 | |
| SRR5643659 | five period of Gastrodia elata | 0.740 | |
| SRR5643660 | five period of Gastrodia elata | 0.200 | |
| SRR5643661 | five period of Gastrodia elata | 0.820 | |
| SRR5643662 | five period of Gastrodia elata | 1.040 | |
| SRR5643663 | five period of Gastrodia elata | 1.090 | |
| SRR5643664 | five period of Gastrodia elata | 0.760 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 5.390 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 2.150 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 10.420 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 6.200 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 11.620 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 7.730 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 12.380 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 11.390 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 13.580 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 14.740 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 6.710 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 6.710 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 6.20 |
| Juven | Juvenile tuber | 0.65 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 5.89 | |
| Mother_Juven | Mother tuber of Juvenile | 0.56 |