Detail information of GWHGAAEX006938/evm.TU.scaffold_191.18


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|530779864|ref|YP_008431664.1|1.00E-24hypothetical protein N186_01315 [Thermofilum sp. 1910b]
KOGKOG00801.00E-126GTPase Rab18, small G protein superfamily
nrgi|743763177|ref|XP_010911541.1|3.95E-139PREDICTED: ras-related protein RABC1 [Elaeis guineensis]
Swissprottr|O23657|RABC1_ARATH4.00E-127Ras-related protein RABC1
trEMBLtr|M0RH32|M0RH32_MUSAM3.00E-138Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr10P10560_001}
TAIRAT1G438901.00E-126RAB GTPASE HOMOLOG B18

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000194461847504546+
Transcript Sequence

Network for GWHGAAEX006938

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00071.21Ras161774.50E-57
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0003924Molecular FunctionGTPase activity
GO:0005525Molecular FunctionGTP binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms33.670
SRR2545915Juvenile tuber31.920
SRP108465SRR5643513five period of Gastrodia elata46.350
SRR5643514five period of Gastrodia elata47.610
SRR5643515five period of Gastrodia elata49.900
SRR5643524five period of Gastrodia elata57.630
SRR5643525five period of Gastrodia elata63.810
SRR5643528five period of Gastrodia elata84.700
SRR5643658five period of Gastrodia elata75.870
SRR5643659five period of Gastrodia elata40.070
SRR5643660five period of Gastrodia elata38.680
SRR5643661five period of Gastrodia elata39.120
SRR5643662five period of Gastrodia elata36.090
SRR5643663five period of Gastrodia elata39.400
SRR5643664five period of Gastrodia elata35.850
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_132.790
SRR6049655Rhizomagastrodiae_C368-T10_good_154.530
SRR6049656Rhizomagastrodiae_C368-T07_good_126.760
SRR6049657Rhizomagastrodiae_C368-T07_good_126.190
SRR6049658Rhizomagastrodiae_C368-T04_good_129.810
SRR6049659Rhizomagastrodiae_C368-T04_good_132.210
SRR6049660Rhizomagastrodiae_C368-T01_good_125.770
SRR6049661Rhizomagastrodiae_C368-T04_good_131.160
SRR6049662Rhizomagastrodiae_C368-T01_good_132.160
SRR6049663Rhizomagastrodiae_C368-T01_good_130.810
SRR6049664Rhizomagastrodiae_C368-T10_good_137.720
SRR6049665Rhizomagastrodiae_C368-T10_good_137.720
SRP279888GastroGastrodia elata tuber 29.42
JuvenJuvenile tuber37.27
Mother_GastroMother tuber of Gastrodia elata 75.92
Mother_JuvenMother tuber of Juvenile 80.30