Detail information of GWHGAAEX006939/evm.TU.scaffold_191.19


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|347538650|ref|YP_004846074.1|6.00E-093'-5' exonuclease [Pseudogulbenkiania sp. NH8B]
KOGKOG22073.00E-145Predicted 3'-5' exonuclease
nrgi|573943870|ref|XP_006654292.1|0PREDICTED: uncharacterized protein LOC102720327 [Oryza brachyantha]
Swissprottr|Q84LH3|WEX_ARATH2.00E-06Werner Syndrome-like exonuclease
trEMBLtr|J3M691|J3M691_ORYBR0Uncharacterized protein {ECO:0000313|EnsemblPlants:OB05G21150.1}
TAIRAT1G563103.00E-145Polynucleotidyl transferase, ribonuclease H-like superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000194555613607788+
Transcript Sequence

Network for GWHGAAEX006939

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01612.19DNA_pol_A_exo13644911.80E-08
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006139Biological Processnucleobase-containing compound metabolic process
GO:0008408Molecular Function3'-5' exonuclease activity
GO:0003676Molecular Functionnucleic acid binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms35.840
SRR2545915Juvenile tuber30.370
SRP108465SRR5643513five period of Gastrodia elata20.170
SRR5643514five period of Gastrodia elata16.520
SRR5643515five period of Gastrodia elata18.150
SRR5643524five period of Gastrodia elata18.150
SRR5643525five period of Gastrodia elata8.810
SRR5643528five period of Gastrodia elata5.600
SRR5643658five period of Gastrodia elata10.240
SRR5643659five period of Gastrodia elata19.270
SRR5643660five period of Gastrodia elata19.690
SRR5643661five period of Gastrodia elata20.630
SRR5643662five period of Gastrodia elata9.930
SRR5643663five period of Gastrodia elata14.590
SRR5643664five period of Gastrodia elata11.860
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_122.890
SRR6049655Rhizomagastrodiae_C368-T10_good_116.450
SRR6049656Rhizomagastrodiae_C368-T07_good_123.610
SRR6049657Rhizomagastrodiae_C368-T07_good_124.430
SRR6049658Rhizomagastrodiae_C368-T04_good_120.700
SRR6049659Rhizomagastrodiae_C368-T04_good_123.780
SRR6049660Rhizomagastrodiae_C368-T01_good_125.110
SRR6049661Rhizomagastrodiae_C368-T04_good_123.820
SRR6049662Rhizomagastrodiae_C368-T01_good_125.690
SRR6049663Rhizomagastrodiae_C368-T01_good_122.670
SRR6049664Rhizomagastrodiae_C368-T10_good_122.410
SRR6049665Rhizomagastrodiae_C368-T10_good_122.410
SRP279888GastroGastrodia elata tuber 22.42
JuvenJuvenile tuber27.51
Mother_GastroMother tuber of Gastrodia elata 8.79
Mother_JuvenMother tuber of Juvenile 19.38