Gene detail

Detail information of GWHGAAEX006941/evm.TU.scaffold_191.21_evm.TU.scaffold_191.22

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG2081	Nuclear transport regulator
nr	gi\|743873409\|ref\|XP_010906804.1\|	PREDICTED: transportin-3 isoform X2 [Elaeis guineensis]
trEMBL	tr\|M0RSS1\|M0RSS1_MUSAM	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr11P16410_001}
TAIR	AT5G62600	ARM repeat superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000194	651691	748143	-

Transcript Sequence
>GWHTAAEX006941 TGATAATAGAATAATTAAAATGACCCGACCGGCACAAAACCCTACTGAAAAGCTTTCTTAGACATTCATTCCAGCAGGGCAATGGAGCTTCACGATATCGTGAAGGAGGCCATAACAGCACTCTACCACCATCCAGATGATGCCGTTCGCGCACAGGCCGATCGCTGGCTTCAAGATTTTCAGCACACCGTTGACGCCTGGCAGGTCTCTGATAGTTTACTCCATGATGCTAGCAGCAATTTAGAGACTCTTATTTTCAGTTCTCAAACTCTGAGAAGCAAGGTGCAACGTGATTTTGAAGAGTTACCTTTAGAAGCCTTTAGGCCTTTACGAGACTCCTTATATGCTTTACTTAAAAAATTCAGCAAAGGCCCTCCTAAAGTTAGGACTCAGATAAGCATTGGCATTGCTGCTTTGGCTGTGCATGTCTCTGTGGAGGACTGGGGAGATGGTGGCATTGTGAATTGGATTAACAATGAAATGAGAATTAATTCTGAATATATTCCAGGCTTGTTAGAGTTGCTCGCTGTTTTACCGGAGGAAGCATACAGTTATAGAATTGCTGCTCGTCCTGAAAGGCGCCGCTGTTTTGAGAAAGAACTAGCATCTTCAGCTGAAATGGCTTTTAGCCTCTTGACGGCTTGCTTGACTTTTGCTGAACTTAAAGACCAGGTATTGGAGTCTTTTTCCTCATGGCTTCGTCTAAGCCGTGGGATATCTGCTACATTATTGGCTTCCCATCCATTAGTACAAGCGGCTCTTTTGTGTTTAAATGCTGAACAGGATCAGCAACATCTTGAAGCTGCTGTAAATGTTGTATCTGAATTAATACACTACACTACAACAAATGAATCTGGTGGTGCTTCAGCACAAATGCCCTTGATTCATATACTTGTTCCCCATGTTATGGGACTCAAAGGCCAGCTCAGAAATCCTTCAAAGGATGAAGAGGATATCAAGGCAGTTGCTCGCTTATTTGCTGATATGGGGGAGTCATATGTTGAGTTGATTGCCAGTGGTTCCGAGGAATCAATGTTAATCGTGCAAGCTTTACTTGAAGTTTCTTCACACGCTGATTATGACATTTCTTCAATGACATTCAACTTCTGGCATCAGCTGCAGTTGATGTTGACTCGAAGAGATTCATATTCATCTTATGAATCCGATGATTTGATTGAGGAAGAGAGGAAGAGGAGGCTAAACAATTTCCGTTTACCATTTCAAATGCTGGTATCTTTGGTTATTTTTCGTGTTGAATATCCACAAGACTATGATGAACTCTCTGAGGAGGAGCACAAGGATTTCAAGCAGATAAGATATGCTGTTGCAGATGCTTTGATTGATGCTGCTGAAGTGTTAGGAGGAGAAGCAACACTAAAAATTCTCTTCATGAAGCTAGCAGAGGCAGCCAACAACAATAGCACTGATGATAACTGTAAGTGGCGTCCTGTAGAGGCAGCATTATACTGTATCCAAGTTCTATCGAAGTCCATATCACTACAGGAAGCAGAAATATTACCCCAGGTTATGACATTAATGGCAAAGCTTCTCAACCCACCTCAATTACTTGAAACTGTTTGTGCTACTATTGGAGCCTATTCAAAATGGTTAAATTCTGCTCCAGTTCAACAGCCTATCCTACCTCCACTGGTTGATATTCTTATTAAAGGCATGAGCACCTCAGAAAATGCTGCTGCAGCTGCCACCCTTGCTTTCAAATACATATGTGAAGATTGCAGAAAGCAGTTTTCAGGGTCATTGGGTAGTCTTTTCCATATTTACCATATTGCAATTAGTGGTGAAAGTGGCTATAAAGTATCACCTGATGACTCGATGTACTTGGTTGAAGCCTTAAGTGTGGTTGTTACCGAACTGTCATCCGAGGATGCAAAAAAGGCGTTGGAGCTGCTTTGCCTGCCAGCTGTTACACCACTTAAAGAAATGATTGGCCATGGCGGTGACTTTCGGCAAATACCTGCACGACAGCTTACTTTTCATATTGACAGACTAGCCTGCATTTTCAGGAATGTTACACAACCTGAGGTGGTGGCAGGTGCATTGCAAGGGCTTTGGCCACTTTTTAAAGCCATCTTTGATCTCCGTGCTTGGGACACAAGGACAATGGAGTCATTATGTCGTGCCTGTAAATATGCTGTGAGAACTTCTGGAAAATTTATGGGCATCACAATTGGAGCGATGCTGGAAACAATCCAAACATTGTATCAGACGCACAATCAATCATGCTTTCTCTATCTTTCAAGTGAAGTCATTAAGATATTTGGATCCGATCCAGCCTGCACCAGCTACCTCCGGAGCTTAATTGAAATGCTTTTCAGCCACACAACAAAACTTCTGTTAACGATTCAAGAATTCACGTCTAGGCCTGATATAGCGGATGATTGCTATTTATTGGCATCAAGATGCATAAGATATTGTCCTGATTTATTTGTCACTCCGTCCATTTTCCCTTCTTTAGTTGAATGTGCGATGATCGGAATAACCATACAGCACAGGGACGCTTGCAGATCAATACTGACCTTCTTATCTGATGTTCTGGATCTACGAAATAGCTCCGGTGGAGACAAGTACCGAGCTATCATAGATAGTGTGATTCTTCCTAGAGGCGCTGCTCTTACCAGAATCTTGATTGCCTCCTTGACTGGCGCACTCCCTTCATCAAGGATTGAGGAGGTATCATACGTTCTGCTGGCCTTTGCCAGATCGTATGGGAGCAGAGTATCAGAGTGGGGAAAGGCAGTTATTTCACTGATACCTTCGTCTGCTCTAACCGAGTCTGAACGCACTAGATTCCTTAAATCTCTGACCGATGTGTCGTCATCTTTGTTGTCGAGTTCGAGTAATGGCTTTACAAATGTGGTTGAAGAATTGTCGGATGTTTGCCGGCGAAACCGGACTGTTCAGGACATTGTTCAGGGAGCTCTCAGGCCTTTAGACTTGCACTTCACTCCTGCTTCTTGACTCAGTTTGCATCTTTGAGTCGCCATATTTGTATTCATTTTTGTGTAAATGAAGTCATTTGGTTAGGTTGGTGCTGGAGCTGAGTGATGGGAATGTCGAGCTCATCACCCAATTTAAGTGCTAACTCTAATAAAGTTAAGAGAATGTGGGCTGAATGTATTTTAGGGCTTTATCTCTCATGAATTTGGTGGGAGACTAGCATGAAGATTGTTGTGGGAGTAAATGAGTAATGTGTGAATTTATGTCTTCCAATACTAGTAAGTTATATAGGAAATGGTGACTTTTATTTCTTATGTATTTAGTTTTGCTTTAGAGACTTTGTTTTGAGTTTGTTGACTGTATATGTCATGCTATGGATGGCTTGTGTTTTCTGGTGAATGAGAATAATCATCTGATACTTATGTAGCCAAGAGTATTAAAAAATGTGTTGCTTGTGTTATGGGTGAGTTTGTTTAAGCAATTTGGCTTGTGTTTATAAACTTTATTTGTATCAATTAAATTTTTT

Network for GWHGAAEX006941

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03810.18	IBN_N	26	89	9.30E-05
PF08389.11	Xpo1	98	245	1.90E-13

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006886	Biological Process	intracellular protein transport
GO:0008536	Molecular Function	Ran GTPase binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	33.820
SRP064423	SRR2545915	Juvenile tuber	35.260
SRP108465	SRR5643513	five period of Gastrodia elata	25.630
	SRR5643514	five period of Gastrodia elata	27.910
	SRR5643515	five period of Gastrodia elata	26.970
	SRR5643524	five period of Gastrodia elata	27.320
	SRR5643525	five period of Gastrodia elata	24.150
	SRR5643528	five period of Gastrodia elata	22.280
	SRR5643658	five period of Gastrodia elata	23.230
	SRR5643659	five period of Gastrodia elata	28.220
	SRR5643660	five period of Gastrodia elata	29.250
	SRR5643661	five period of Gastrodia elata	27.520
	SRR5643662	five period of Gastrodia elata	26.870
	SRR5643663	five period of Gastrodia elata	28.880
	SRR5643664	five period of Gastrodia elata	29.810
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	30.140
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	26.730
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	27.380
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	33.400
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	29.630
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	35.160
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	31.040
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	27.510
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	25.270
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	27.600
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	28.090
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	28.090
SRP279888	Gastro	Gastrodia elata tuber	34.81
	Juven	Juvenile tuber	32.94
	Mother_Gastro	Mother tuber of Gastrodia elata	30.79
	Mother_Juven	Mother tuber of Juvenile	30.53