Gene detail

Detail information of GWHGAAEX006944/evm.TU.scaffold_191.28

Functional Annotation

Database	Orthologs	Annotation
nr	gi\|743873319\|ref\|XP_010906787.1\|	PREDICTED: uncharacterized protein LOC105033613 [Elaeis guineensis]
trEMBL	tr\|M0SZP8\|M0SZP8_MUSAM	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr5P18690_001}
TAIR	AT5G43310	COP1-interacting protein-related

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000194	939751	959386	-

Transcript Sequence
>GWHTAAEX006944 ATGAGGTCAGAGACAAGACTGAACTCAGCTGTGTTCCAACTCACACCGACGCGAACTAGGTGTGATCTTGTAATCATAGCCAATGGAAAGACAGAAAAGATTGCGTCCGGTCTAGTGAATCCTTTTCTTTCCCATCTGAAGACTGCGCAGGATCAGATTGCAAGAGGTGGGTATTCTATCAGACTTGAACCAGATCCTGATGTTGAAGCTGCATGGTTTACAAAGGGTACTGTTGAGAGATTTGTCCGCTTTGTGAGTACACCTGAGGTCTTGGAAAGAGTAAATACTATAGAATCTGAGATTTTACAGATTGATGAGGCGATTGCTATTCAGGGAAATGAAAATTTTGGCCTTAAATCGGTGGAAGATCATCAAATGAAATCATATGGAAGCATTGAAGGTAACAAGTCCACATTTGATTCAGATGCTGAGAAGGCTATAATTCTTTATAAACCTGGATCATATCTCAATCCACCAGAGTCAAATGGATCAAAAGTGCATGAGGAGAATTCAAAGGTTGAGCTTCTAAGAGTTCTTGAAAGTCGCAAAAAGGTTTTACAGAAGGAACAAGCTATGGCCTTTGCACGTACTACAGCTGCTGGCTTTGACTTGGAAAACTTGACCCAATTAATATCATTTGCAGAGTCATTTGGTGCTTCCCGATTGATGGAGGCATGTGTACGGTATACTCAATTATGGAAGGGAAAACATGAAACTGGACAATGGATAGAAGTTGAACCTGCAGAAGCACTGTCTTATAAGCCTGATTTTTCTCCTCTGAATTCTACTGGGATTATTCTTTCTGGAGATACTATGAAACAAAAAGATATGGGGGAATCATGGCCAGTAACTAGCATAGATGCAACCATGGGGAGTAATGGAAATTCTATTAGCCAGGACAATGATAGAGAAAAAAGGTTTCCTTCAGAACCACAGGCACCTCATGGTCCGCATGAGTATTATCATGGACAGTTTCCGCATCCAGCTTTTCATCAGTGGCCTGCGCTTTCTCAAGCAAATCCTCATGGATTTCATCCATTTCCTATTCAAGCTATGCCGTACTATCCAAATTATCCAATGAATGGTCAATTCTTTCAGCCCCCGCCCGCTCCTGTGGAAGATCCTAGTTTCAATGCATCAAAAAGAAAGGCAAAGAAGAAACATTCTATGAACAGTGATAGTACTTCCACATCAGAGGATGGTTCAGGTGAAAGTACCTCGGAGTCTGAGGAAGTGTCATCTAGAAGCCGCAGTTCTCATCGCAAATCTGGCCATTCTAGGAAGAAAAAGGGTGTTGTAGTTATTCGAAATTTGAATTACATTGCAGGAAAGACACATGAGACTTCCGGAAATGGATCAGAATCTGCACATGACTCTGAAATTGAAGAAAGTAAGGATTCAAAACCTTCGAAGAGAAAGAGTGAACATTCAAAATCTTTGGCAATCTCACTTGTACATGCAAAGGATGATGATGTATACTCACAAGAAGCAGACACTGGAAATTGGCAAGCATTTCAGAGTTTCTTATTGAGAGCTGAAGAGAAAATGACTAGTGTGGTTAATGGAGACATATTGGCTAGTGAGAAAGAGCCTTTAGCTAAGAAAGGGAAGAATAAAGGTGAACCTGATTCTCTTCTTCTTCCTGGAGGAGATTCAAGTTGTTATCAAGAAAAAGGTTCCATGGAGTATGATATGATTAGTGGCAAGGGAGACCGAGCTAAGCATGCAGTTTCGGTTGATGAATTCTTAGTAACAAATGCAGGTAAAGGCTTGCAAGACAATGCTCAGTTTAAAGGGATAGAAGATGGAGTTGGTGGATATCGAAAAGCTACGAGTGATGATTTCATAATGTATGGACGTGAGAATCAGGTGGGAGGCAAGATTCCCTCAGATCCGTCGGTTGAATTTGAACATGAACATCATACAAATTCTGAGAAGAGTTCGTTGCACAATGTAAATGATGAGTCATTTATGGTTCCTTTAAGGTCAGGTTCACAAGATCTGCAGGGAACGGACAGAAGGCTTGCTATTGATTTGGAGTCTGAGTTTCCTTCAGTTCTTCAAAGAAGTGAGAATTCTAACAATAAGGAAACTTCTAGCATTACCTATGAGCCAGATGATTTAACCTTCATGCTTCAACGTGCAAGAGAGAGTGAATCAGTTGGCTATGATCCAGCTTTAGATTATGACATTCAAGTTCCTCTTGTTGTTAAGCTTGATTCCAAGAACCATGAAGATGCTTTGGCAATCACCAATGAAGGATTGTTGAAAACCGTTGAGGAAAAGAAGCTGAAATCTCCTTATGATGGATTGCAGAAGAAAAGAAAGGAAGTGCTGATGACAAATATATCTTCTTCAAAGTCCACCCCTTTGACTGAAGCACAAAAGAGAGCAGAAAAGCTACGAAATTACAAAGCTGATCTTCAAAAGCTGAAGAAAGAACAGGAAGCAGAAGAGATAAGAAGATTAGAAGCATTGAAAAGAGAAAGGCAGAAACGGATAGCTGCAAGAAATGGTTCCAATTCGGCTCAATCACCAGCTACCCCACAGAAGCACAAACCAACGCTGCCCTTAAAACTTTCACCTAGTTCTCACAAAAGCACCAAATTTAGTGACTCAGAATCTGGATCAAATTTACATCTTGAAAAGTTGCCTAGAAATGTTTGTTCAATTGTGCCCAACGATTCTGATAAAGCATCTAAAACTGCCAGAGTAAGTGGCTTAAGTCGTTCAGCATCATCATTGCAAGATTTCAATAGAGAAAGCGTTAAACAGCTGGGAAATTCAGCTTCTGAACGTATTAGAAGACTTTCAGAGCCCAAAAGCATTAGTACTCGTAGTGTTCCAGCAAAGTTATCAAGAACCATTCAAGCGAAAAAGAGGCCATCACCTGAGGAACGTCAATCAAAAAAGATATCTGCAATAATACAGCTTGATAGGACCAAGTCAGAAACCCTGCCAGAACTGAAGATAAGTGCATATAGAAATCCTTTGGAAGCATCCAAGAACAAGCCAACTACTAAGCAACTGAAAGAATCTGGCAGCAGACCTAGTGTGATCTCTGAAAGCAGCCATTGTGACGCAAAAGTTGATAAGAATCTCAGTTTTAGTTACAATGATGAGAATCTTGTGATTGAGAAGACTGTGGTGACGCTTGAAAATGAAGTTATTTCGGGTTTGTCTGTTGAGGCATCTGAAGGCAAGATAGATTCAGCTGATAAATCATACAAGAATATCAGACAAACGATGAACGGAATAGATAGTGGATATACTGAAATTAGGGGTCCCCCTCCTTTTATTTGTGGAGCTGAAATTGGAAGTACAGTTAAAGGCAACAAGGATAGTAGATTAAATTCTTATGAGGTTGCCAACCACGGGCTAATGGATGAACCTGAGAAGTTTTTGGAACAATCTGTTTCTGAGAAGCTTTGTCTTTCTCCATTTGCAAGGGCATCATCTTCAAAGGATCCTGAAAACATTCTTCGATATGCTGAAAGGCCACCAATCCTCAGCACTGAAAAGGCTGATTCTGGTGCTCAAGCTATAAAGCCTCGTGTACCAAGTGCCTTGGGTATGATCCAAACAGATGAACCACATGAGAAGGCACGAAACAAAGAATCCAAGGGCTTTAAAAAGTTCTTGAAATTTGGGAGAAAAGGCCAAAGCTCTAGTTCGGGTGATGGTAACCCGGATTCAAATGGATCAGCTGTTGATGATCACATGGTGGCTGCTTCATCCTCTAGTGACTTTTCTACACTGAAGAATTTGATCTCTCAAGAGGAAAATGATATTGTTGGCGCTCTAACAAAAGTTTCTCGACCATTCTTCATTCCATTTCGAGGGAGGAACAGTGACAAGAAGATTGCAGCTTGA

Network for GWHGAAEX006944

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

>GWHPAAEX006944
MRSETRLNSAVFQLTPTRTRCDLVIIANGKTEKIASGLVNPFLSHLKTAQDQIARGGYSIRLEPDPDVEAAWFTKGTVERFVRFVSTPEVLERVNTIESEILQIDEAIAIQGNENFGLKSVEDHQMKSYGSIEGNKSTFDSDAEKAIILYKPGSYLNPPESNGSKVHEENSKVELLRVLESRKKVLQKEQAMAFARTTAAGFDLENLTQLISFAESFGASRLMEACVRYTQLWKGKHETGQWIEVEPAEALSYKPDFSPLNSTGIILSGDTMKQKDMGESWPVTSIDATMGSNGNSISQDNDREKRFPSEPQAPHGPHEYYHGQFPHPAFHQWPALSQANPHGFHPFPIQAMPYYPNYPMNGQFFQPPPAPVEDPSFNASKRKAKKKHSMNSDSTSTSEDGSGESTSESEEVSSRSRSSHRKSGHSRKKKGVVVIRNLNYIAGKTHETSGNGSESAHDSEIEESKDSKPSKRKSEHSKSLAISLVHAKDDDVYSQEADTGNWQAFQSFLLRAEEKMTSVVNGDILASEKEPLAKKGKNKGEPDSLLLPGGDSSCYQEKGSMEYDMISGKGDRAKHAVSVDEFLVTNAGKGLQDNAQFKGIEDGVGGYRKATSDDFIMYGRENQVGGKIPSDPSVEFEHEHHTNSEKSSLHNVNDESFMVPLRSGSQDLQGTDRRLAIDLESEFPSVLQRSENSNNKETSSITYEPDDLTFMLQRARESESVGYDPALDYDIQVPLVVKLDSKNHEDALAITNEGLLKTVEEKKLKSPYDGLQKKRKEVLMTNISSSKSTPLTEAQKRAEKLRNYKADLQKLKKEQEAEEIRRLEALKRERQKRIAARNGSNSAQSPATPQKHKPTLPLKLSPSSHKSTKFSDSESGSNLHLEKLPRNVCSIVPNDSDKASKTARVSGLSRSASSLQDFNRESVKQLGNSASERIRRLSEPKSISTRSVPAKLSRTIQAKKRPSPEERQSKKISAIIQLDRTKSETLPELKISAYRNPLEASKNKPTTKQLKESGSRPSVISESSHCDAKVDKNLSFSYNDENLVIEKTVVTLENEVISGLSVEASEGKIDSADKSYKNIRQTMNGIDSGYTEIRGPPPFICGAEIGSTVKGNKDSRLNSYEVANHGLMDEPEKFLEQSVSEKLCLSPFARASSSKDPENILRYAERPPILSTEKADSGAQAIKPRVPSALGMIQTDEPHEKARNKESKGFKKFLKFGRKGQSSSSGDGNPDSNGSAVDDHMVAASSSSDFSTLKNLISQEENDIVGALTKVSRPFFIPFRGRNSDKKIAA

Gene family

Gene family	subfamily
Ubiquitin Family	3-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	25.670
SRP064423	SRR2545915	Juvenile tuber	43.740
SRP108465	SRR5643513	five period of Gastrodia elata	26.970
	SRR5643514	five period of Gastrodia elata	30.030
	SRR5643515	five period of Gastrodia elata	27.420
	SRR5643524	five period of Gastrodia elata	26.720
	SRR5643525	five period of Gastrodia elata	20.180
	SRR5643528	five period of Gastrodia elata	18.860
	SRR5643658	five period of Gastrodia elata	26.830
	SRR5643659	five period of Gastrodia elata	34.280
	SRR5643660	five period of Gastrodia elata	32.110
	SRR5643661	five period of Gastrodia elata	32.410
	SRR5643662	five period of Gastrodia elata	28.410
	SRR5643663	five period of Gastrodia elata	37.480
	SRR5643664	five period of Gastrodia elata	27.940
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	23.310
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	25.070
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	26.180
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	22.390
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	22.080
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	20.180
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	23.550
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	25.840
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	26.490
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	24.900
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	22.940
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	22.940
SRP279888	Gastro	Gastrodia elata tuber	30.76
	Juven	Juvenile tuber	34.57
	Mother_Gastro	Mother tuber of Gastrodia elata	10.94
	Mother_Juven	Mother tuber of Juvenile	17.32