Detail information of GWHGAAEX006948/evm.TU.scaffold_191.32_evm.TU.scaffold_191.33


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|189502133|ref|YP_001957850.1|6.00E-22hypothetical protein Aasi_0738 [Candidatus Amoebophilus asiaticus 5a2]
nrgi|743767597|ref|XP_010914066.1|0PREDICTED: probable E3 ubiquitin-protein ligase XBOS32 [Elaeis guineensis]
Swissprottr|Q6KAE5|XB32_ORYSJ0Probable E3 ubiquitin-protein ligase XBOS32
trEMBLtr|M0SKC5|M0SKC5_MUSAM0Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr4P02080_001}
TAIRAT5G072709.00E-126XB3 ortholog 3 in Arabidopsis thaliana

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000019410655281111140-
Transcript Sequence

Network for GWHGAAEX006948

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF12796.6Ank_220811.10E-06
PF12796.6Ank_2882059.30E-13
PF00023.29Ank2232535.30E-07
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms11.220
SRR2545915Juvenile tuber14.520
SRP108465SRR5643513five period of Gastrodia elata11.630
SRR5643514five period of Gastrodia elata10.760
SRR5643515five period of Gastrodia elata10.370
SRR5643524five period of Gastrodia elata13.840
SRR5643525five period of Gastrodia elata15.060
SRR5643528five period of Gastrodia elata14.860
SRR5643658five period of Gastrodia elata11.050
SRR5643659five period of Gastrodia elata7.490
SRR5643660five period of Gastrodia elata7.560
SRR5643661five period of Gastrodia elata9.100
SRR5643662five period of Gastrodia elata7.270
SRR5643663five period of Gastrodia elata7.980
SRR5643664five period of Gastrodia elata5.870
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_17.210
SRR6049655Rhizomagastrodiae_C368-T10_good_17.670
SRR6049656Rhizomagastrodiae_C368-T07_good_19.930
SRR6049657Rhizomagastrodiae_C368-T07_good_17.680
SRR6049658Rhizomagastrodiae_C368-T04_good_110.320
SRR6049659Rhizomagastrodiae_C368-T04_good_110.180
SRR6049660Rhizomagastrodiae_C368-T01_good_110.000
SRR6049661Rhizomagastrodiae_C368-T04_good_110.860
SRR6049662Rhizomagastrodiae_C368-T01_good_112.400
SRR6049663Rhizomagastrodiae_C368-T01_good_19.420
SRR6049664Rhizomagastrodiae_C368-T10_good_110.960
SRR6049665Rhizomagastrodiae_C368-T10_good_110.960
SRP279888GastroGastrodia elata tuber 9.65
JuvenJuvenile tuber9.48
Mother_GastroMother tuber of Gastrodia elata 10.91
Mother_JuvenMother tuber of Juvenile 8.84