Detail information of GWHGAAEX006955/evm.TU.scaffold_191.41
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|82702522|ref|YP_412088.1| | 3.00E-99 | ATP-dependent helicase HrpA [Nitrosospira multiformis ATCC 25196] |
| KOG | KOG0920 | 0 | ATP-dependent RNA helicase A |
| nr | gi|672165007|ref|XP_008802397.1| | 0 | PREDICTED: ATP-dependent RNA helicase DHX36 isoform X1 [Phoenix dactylifera] |
| Swissprot | tr|Q38953|DHX8_ARATH | 4.00E-103 | Probable pre-mRNA-splicing factor ATP-dependent RNA helicase |
| trEMBL | tr|K4A5C3|K4A5C3_SETIT | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:Si034077m} |
| TAIR | AT2G35920 | 0 | RNA helicase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000194 | 1294817 | 1355010 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX006955
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00270.28 | DEAD | 264 | 419 | 1.30E-08 |
| PF00271.30 | Helicase_C | 519 | 648 | 6.90E-18 |
| PF04408.22 | HA2 | 712 | 800 | 2.10E-21 |
| PF07717.15 | OB_NTP_bind | 870 | 951 | 2.10E-19 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K14442 | DHX36, RHAU | RNA degradation | map03018 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0004386 | Molecular Function | helicase activity |
| GO:0005524 | Molecular Function | ATP binding |
| GO:0003676 | Molecular Function | nucleic acid binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 12.200 |
| SRR2545915 | Juvenile tuber | 13.870 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 11.020 |
| SRR5643514 | five period of Gastrodia elata | 12.350 | |
| SRR5643515 | five period of Gastrodia elata | 10.300 | |
| SRR5643524 | five period of Gastrodia elata | 11.460 | |
| SRR5643525 | five period of Gastrodia elata | 8.230 | |
| SRR5643528 | five period of Gastrodia elata | 5.820 | |
| SRR5643658 | five period of Gastrodia elata | 7.970 | |
| SRR5643659 | five period of Gastrodia elata | 10.970 | |
| SRR5643660 | five period of Gastrodia elata | 11.830 | |
| SRR5643661 | five period of Gastrodia elata | 10.600 | |
| SRR5643662 | five period of Gastrodia elata | 10.920 | |
| SRR5643663 | five period of Gastrodia elata | 11.630 | |
| SRR5643664 | five period of Gastrodia elata | 11.880 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 15.400 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 11.920 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 14.750 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 15.840 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 16.180 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 16.040 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 16.540 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 18.200 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 16.590 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 17.810 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 14.780 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 14.780 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 15.59 |
| Juven | Juvenile tuber | 19.64 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 15.86 | |
| Mother_Juven | Mother tuber of Juvenile | 21.33 |